Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02184 and RBAM_012800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02184___dppD.1.9828.seq
# -bsequence dna-align/RBAM_012800___dppD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02184___dppD-RBAM_012800___dppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02184___dppD-RBAM_012800___dppD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02184___dppD
# 2: RBAM_012800___dppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1053
# Identity: 768/1053 (72.9%)
# Similarity: 768/1053 (72.9%)
# Gaps: 69/1053 ( 6.6%)
# Score: 2716.0
#
#
#=======================================
BSNT_02184___ 1 ATGG---AAAAAGTTCTGTCAGTCCAAAATCTGCACGTGTCTTTTACGAC 47
|||| |..|||||||.||.||.|||||||||||.||..|||||.|.||
RBAM_012800__ 1 ATGGCGCAGCAAGTTCTTTCCGTTCAAAATCTGCATGTTACTTTTTCAAC 50
BSNT_02184___ 48 TTACGGCGGGACGGTTCAGGCGGTCAGAGGGGTGAGCTTTGATTTGTATC 97
.|||||.||.||.||..|.||.||||||||.||.|||||.|||||.|||.
RBAM_012800__ 51 ATACGGAGGCACTGTAAAAGCCGTCAGAGGCGTCAGCTTCGATTTATATA 100
BSNT_02184___ 98 AAGGAGAAACCTTTGCGATCGTCGGCGAATCCGGCTGCGGCAAAAGCGTG 147
||||.|||||.||||||||||||||.|||||.||||||||.|||||||||
RBAM_012800__ 101 AAGGTGAAACGTTTGCGATCGTCGGTGAATCGGGCTGCGGAAAAAGCGTG 150
BSNT_02184___ 148 ACCTCCCAAAGCATCATGGGCCTGCTTCCGCCTTATTCGGCGAAG-GTGA 196
||.||.|||..|.|.|||||.||.||||||....|||||||.||| .|||
RBAM_012800__ 151 ACGTCACAAGCCGTGATGGGTCTTCTTCCGAAACATTCGGCAAAGATTGA 200
BSNT_02184___ 197 CAGACGGCAGCATTCTATTTAAAAACATAGACCTTTGCCGTCTCTCTGAC 246
|..|||.|||||.|.|||||||.|.|.|||||||||||...|.||.||.
RBAM_012800__ 201 -ATCCGGAAGCATACAATTTAAACAGAAAGACCTTTGCCAAATGTCGGAT 249
BSNT_02184___ 247 AAAGAAATGAGAGGTATAAGGGGAGC-CGACATTTCTATGATTTTTCAAG 295
...||||||.|.||.||..|||| || |||.|||||||||||.|||||.|
RBAM_012800__ 250 CGGGAAATGCGGGGAATCCGGGG-GCGCGATATTTCTATGATCTTTCAGG 298
BSNT_02184___ 296 ACCCGATGACGGCGTTAAACCCTACGCTGACTGTCGGCGACCAGCTGGGG 345
||||||||||||||.|.||.||.||..||||..|.||..|.|||||....
RBAM_012800__ 299 ACCCGATGACGGCGCTCAATCCGACTTTGACCATAGGGAATCAGCTCTCA 348
BSNT_02184___ 346 GAAGCGCTATT--------GCGCCACAAAAAAATGAGCAAAAAAGCGGCA 387
||||||||.|| ||||||..|.| ||.|||.||||.|.|
RBAM_012800__ 349 GAAGCGCTGTTGGAACACCGCGCCATGACA-----AGAAAACAAGCTGAA 393
BSNT_02184___ 388 -CGGAAAGAGGTGCTTTCCATGCTG--TCATTGGTTGGTATTCCAGATCC 434
|.||| ||.||..|||||||| || ||||.|||||.||.|| |.
RBAM_012800__ 394 TCCGAA----GTTCTCGCCATGCTGGATC--TGGTCGGTATCCCGGA-CT 436
BSNT_02184___ 435 CGAAGA--GCGCCTAAAGCAATATCCCCACCAATTCAGCGGCGGCATGAG 482
|||| | .|||||.|||||.||.|||||||||||.|||||.||||||.|
RBAM_012800__ 437 CGAA-ATCCCGCCTGAAGCAGTACCCCCACCAATTAAGCGGGGGCATGCG 485
BSNT_02184___ 483 ACAGCGGATTGTCATTGCGATGGCGCTGATTTGCGAGCCTGACATCTTAA 532
.||||||||.||.||.||||||||.|||||.||||||||.||.||..|.|
RBAM_012800__ 486 GCAGCGGATCGTGATCGCGATGGCTCTGATCTGCGAGCCGGAAATTATGA 535
BSNT_02184___ 533 TTGCGGATGAACCGACCACCGCCCTGGATGTAACCATTCAGGCACAGATT 582
|.||.|||||||||||.||.||.||.|||||.||.|||||.|||||.||.
RBAM_012800__ 536 TCGCCGATGAACCGACAACGGCTCTTGATGTGACGATTCAAGCACAAATC 585
BSNT_02184___ 583 TTAGAGCTGTTTAAAGAGATTCAGAGAAAAACGAATGTGTCTGTCATTCT 632
.|.||..|.|||||..|||||||.||||||||....||||||.|.|||||
RBAM_012800__ 586 CTTGAATTATTTAAGAAGATTCAAAGAAAAACAGGCGTGTCTATTATTCT 635
BSNT_02184___ 633 GATTACGCACGATTTAGGGGTTGTTGCCCAGGTAGCTGACAGAGTCGCAG 682
|||.||.||||||.|.||.||.||.||.|||...||.|||||||||||.|
RBAM_012800__ 636 GATCACACACGATCTCGGCGTCGTCGCTCAGACCGCCGACAGAGTCGCCG 685
BSNT_02184___ 683 TCATGTATACCGGGAAAATGGCGGAAATCGGCACAAGAAAAGATATTTTT 732
||||||||.|.||||||||.||.|||||||||||.||..|.|||||||||
RBAM_012800__ 686 TCATGTATGCGGGGAAAATCGCCGAAATCGGCACGAGGCATGATATTTTT 735
BSNT_02184___ 733 TATCAGCCGCAGCACCCATATACAAAAGGCCTGCTGGGCTCTGTCCCGCG 782
||.|..|||...||.|||||.|||||.||.|||||..|.||.||.|||||
RBAM_012800__ 736 TACCGTCCGGCTCATCCATACACAAAGGGGCTGCTTCGTTCAGTGCCGCG 785
BSNT_02184___ 783 GCTGGATTTAGATGGCG----CTGAGCTGACCCCGATTGACGGAACGCCG 828
||||||| ||||.| .|||||||.|.|||||||||||.||||||
RBAM_012800__ 786 GCTGGAT----ATGGAGGATAGTGAGCTGTCGCCGATTGACGGGACGCCG 831
BSNT_02184___ 829 CCGGATTTATTTTCG--CCTCCGCCGGGCTGCCCGTTTGCCGCCCGCTGT 876
||.|||||| |||| ||.|||||||||||||||||||||||||||||.
RBAM_012800__ 832 CCTGATTTA--TTCGATCCGCCGCCGGGCTGCCCGTTTGCCGCCCGCTGC 879
BSNT_02184___ 877 CCGAACAGGATGGTTGTGTGTGACAGGGTGTACCCGGGCCAGACGA---T 923
|||.||||||||.|.||.|||||.|.|||.||||||| || ||.| |
RBAM_012800__ 880 CCGGACAGGATGATCGTCTGTGAAAAGGTATACCCGG--CA-ACAACCGT 926
BSNT_02184___ 924 CAGATCTGACTCGCACACCGTCAACTGCTGGCTGCAGGATCAACGAGCAG 973
.|.|||..|....||.|.|||||||||||||||.||||||||.||.||||
RBAM_012800__ 927 GAAATCCAAAAGCCATATCGTCAACTGCTGGCTTCAGGATCACCGTGCAG 976
BSNT_02184___ 974 AGC-----ATGC----GGTGCTGTCAGGAGATGCGAA----GGATTGA-- 1008
||| |.|| |.||..|.|||.|||.|..|| |||||||
RBAM_012800__ 977 AGCGGCTGAAGCAGCAGCTGACGGCAGCAGAGGAAAAAGGGGGATTGAAA 1026
BSNT_02184___ 1008 --- 1008
RBAM_012800__ 1027 TGA 1029
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