Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02182 and RBAM_012780

See Amino acid alignment / Visit BSNT_02182 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02182___dppB.1.9828.seq
#    -bsequence dna-align/RBAM_012780___dppB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02182___dppB-RBAM_012780___dppB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02182___dppB-RBAM_012780___dppB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02182___dppB
# 2: RBAM_012780___dppB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity:     727/938 (77.5%)
# Similarity:   727/938 (77.5%)
# Gaps:          22/938 ( 2.3%)
# Score: 2811.0
# 
#
#=======================================

BSNT_02182___      1 TTGGCGCGATACATGATAAAGCGTTTTTGGGCAATGGCAGCTACGATTTT     50
                     |||..|||.||..|.||.||.||||||...||.||         ||||.|
RBAM_012780__      1 TTGCTGCGGTATTTTATCAAACGTTTTATCGCCAT---------GATTAT     41

BSNT_02182___     51 G---------GTGATTACCACCCTGACTTTTGTTCTCATGAAGGTCATTC     91
                     |         ||.||||||||.|||||.|||||..|.|||||.||.||.|
RBAM_012780__     42 GACCGTCCTCGTCATTACCACTCTGACATTTGTCATGATGAAAGTGATAC     91

BSNT_02182___     92 CCGGATCTCCTTTTAACGAGGAGAGAGGCACAAATGAAGCCGTTCAAAAA    141
                     ||||.||.|||||||||||.|||.|.||||||||.|||||.||.||...|
RBAM_012780__     92 CCGGCTCGCCTTTTAACGAAGAGCGGGGCACAAACGAAGCGGTCCAGCGA    141

BSNT_02182___    142 AATCTCGAAGCCTACTATCA-CTTAGACGATCCTCTCATTTTCCAATACA    190
                     |||||||||.|||||||.|| ||.| ||||.|||||.||....||||||.
RBAM_012780__    142 AATCTCGAATCCTACTACCATCTGA-ACGAACCTCTTATCACTCAATACG    190

BSNT_02182___    191 TTTTCTACTTAAAATCCATCATTACATTCGATTTCGGACCTTCAATTAAA    240
                     ...||||..||||||||||..||||.||.||||||||.||||||||||||
RBAM_012780__    191 CCATCTATCTAAAATCCATTCTTACCTTTGATTTCGGTCCTTCAATTAAA    240

BSNT_02182___    241 AAACCGTCGGACAGCGTAAATGATATGCTGGAACGCGGATTTCCCGTTTC    290
                     ||||||||.|||||.|||||.|.||||||.||||||||.|||||.||.||
RBAM_012780__    241 AAACCGTCAGACAGTGTAAACGCTATGCTCGAACGCGGGTTTCCGGTCTC    290

BSNT_02182___    291 CTTTGAGCTTGGGATGACAGCGATTGTCATTGCTGTGATTTCTGGGCTGG    340
                     .||||||||||||||.||.|||||..||||.|||||.|||||.||.||.|
RBAM_012780__    291 ATTTGAGCTTGGGATAACGGCGATCATCATCGCTGTTATTTCCGGACTCG    340

BSNT_02182___    341 TGCTGGGCGTAATCGCTGCACTCCGCCGCAATGGGTTTTTGGACTACGCC    390
                     .|||.|||.||||.||.||.|||.|.|||...||.|||.|.||.||.||.
RBAM_012780__    341 CGCTCGGCATAATGGCCGCTCTCAGGCGCGGCGGCTTTCTCGATTATGCA    390

BSNT_02182___    391 GCGATGAGTCTTGCAGTACTCGGCATCTCCATCCCGAATTTTATTCTGGC    440
                     ||.|||||.|||||.||.|||||.||.|||||.||||||||||||.||||
RBAM_012780__    391 GCCATGAGCCTTGCGGTGCTCGGGATTTCCATTCCGAATTTTATTATGGC    440

BSNT_02182___    441 AACATTGCTCATTCAGCAATTTGCTGTCAATCTCAAACTATTTCCCGCTG    490
                     .||..||||.||||||||||||||.||..||||.|.|...|||||.||.|
RBAM_012780__    441 TACGCTGCTGATTCAGCAATTTGCGGTTCATCTGAGATGGTTTCCGGCAG    490

BSNT_02182___    491 CCACATGGACGAG-CCCGATTCATATGGTGCTTCCGACCGCAGCGCTTGC    539
                     |.||.|||||||| |||| ||||.|||||.||.|||||.|..||||||||
RBAM_012780__    491 CTACCTGGACGAGTCCCG-TTCACATGGTCCTGCCGACTGTTGCGCTTGC    539

BSNT_02182___    540 TGTAGGGCCAATGGCGATCATTGCCAGGCTGACACGGTCGAGCATGGTCG    589
                     .||.||.||.|||||.||.||.||.|||||||||.|.||.|||||||.||
RBAM_012780__    540 CGTCGGTCCCATGGCCATTATCGCGAGGCTGACAAGATCAAGCATGGCCG    589

BSNT_02182___    590 AAGTTCTGACACAGGATTATATCCGCACAGCAAAAGCAAAAGGGCTTTCT    639
                     ||||.|||||.||||||||.||||||||.|||||||||||.|||||||||
RBAM_012780__    590 AAGTGCTGACTCAGGATTACATCCGCACGGCAAAAGCAAAGGGGCTTTCT    639

BSNT_02182___    640 CCGTTCAAAATTATCGTAAAACACGCACTCAGAAATGCACTCATGCCCGT    689
                     ||..||||||||.|..|.|||||||||.|.|.||||||.||.|||||.||
RBAM_012780__    640 CCCGTCAAAATTGTGATCAAACACGCATTGAAAAATGCTCTTATGCCTGT    689

BSNT_02182___    690 CATTACCGTCCTGGGCACACTCGTCGCCAGCATCTTAACAGGAAGCTTTG    739
                     ..|.||.||.||.||.||.||.|.|||.||.||.|||||.||.||.||.|
RBAM_012780__    690 TGTGACAGTACTCGGGACGCTTGCCGCAAGTATTTTAACGGGCAGTTTCG    739

BSNT_02182___    740 TCATTGAAAAAATCTTTGCCATTCCGGGAATGGGAAAATATTTTGTTGAA    789
                     ||||.||.|||||.||||||||.|||||||||||.||||||||.||.|||
RBAM_012780__    740 TCATCGAGAAAATTTTTGCCATACCGGGAATGGGCAAATATTTCGTAGAA    789

BSNT_02182___    790 AGCATTAATCAGCGGGACTACCCCGTGATTATGGGAACGACCGTTTTTTA    839
                     |||||.||||||||.||.|||||.||.||.||||||||||||||.|||||
RBAM_012780__    790 AGCATCAATCAGCGAGATTACCCGGTCATCATGGGAACGACCGTATTTTA    839

BSNT_02182___    840 CAGCGTCATTCTGATTATCATGCTGTTTTTGGTCGATTTGGCCTACGGTC    889
                     |||.||.||||||||..||.|||||||||||||.||||||||.|||||.|
RBAM_012780__    840 CAGTGTGATTCTGATCGTCCTGCTGTTTTTGGTTGATTTGGCATACGGCC    889

BSNT_02182___    890 TCTTAGACCCGCGCATTAAACTGCATAAGAAAGGGTGA    927
                     |.||||||||||||||.|||||.|||||||||||||||
RBAM_012780__    890 TGTTAGACCCGCGCATAAAACTTCATAAGAAAGGGTGA    927


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