Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02176 and RBAM_012720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02176___ykcA.1.9828.seq
# -bsequence dna-align/RBAM_012720___ykcA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02176___ykcA-RBAM_012720___ykcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02176___ykcA-RBAM_012720___ykcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02176___ykcA
# 2: RBAM_012720___ykcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity: 723/971 (74.5%)
# Similarity: 723/971 (74.5%)
# Gaps: 40/971 ( 4.1%)
# Score: 2582.5
#
#
#=======================================
BSNT_02176___ 1 ATGAAAGTTAACGGCATTCACCACGTATCGGCATTAACGGCCGACGCACA 50
|||||||||||.||.||.|||||.|||||.|||||.|||||.||.||.||
RBAM_012720__ 1 ATGAAAGTTAATGGAATACACCATGTATCAGCATTGACGGCTGATGCGCA 50
BSNT_02176___ 51 AAAAAACTTGGATTTCTATAAGAAAGTATTAGGATTAAAGCTCGTCAAAA 100
.|||||.||.|||||||||..|||..|..|.|||.|.|||||.||.||||
RBAM_012720__ 51 GAAAAATTTAGATTTCTATCGGAACATCCTGGGACTGAAGCTTGTGAAAA 100
BSNT_02176___ 101 AATCCGTCAATCAGGATGAACCGACCATGTACCATCTGTTCTACGGAGAT 150
|.|||||.||.||||||||||||||.|||||.|||.||||.|||||.|||
RBAM_012720__ 101 AGTCCGTAAACCAGGATGAACCGACGATGTATCATTTGTTTTACGGTGAT 150
BSNT_02176___ 151 GAAGTGGCAAACCCGGGAACTGAGCTGACGTTTTTCGAGATTCCCCGCAT 200
|||...||.||.||||||.|.||..|||||||||||||.|||||.||.||
RBAM_012720__ 151 GAAACAGCCAATCCGGGATCGGAATTGACGTTTTTCGAAATTCCGCGGAT 200
BSNT_02176___ 201 TGCACCGTTTCATGCAGGAACAAACAGTATTTCTTCTATTGGTTTGCGCG 250
|||.|||||||||||.||||||||||||||||||||.||.||..||||.|
RBAM_012720__ 201 TGCGCCGTTTCATGCGGGAACAAACAGTATTTCTTCAATCGGCCTGCGTG 250
BSNT_02176___ 251 TCCC--AAGCACAGAAGCCCTGCATTACTGGAAAGAACGTTTTGAAGAGC 298
|||| |.|||| ||||.|||||.||.||||||.||||.||.|||||||
RBAM_012720__ 251 TCCCGGATGCAC--AAGCGCTGCAATATTGGAAAAAACGATTCGAAGAGC 298
BSNT_02176___ 299 AGCAAGTAACGCACA--GCGGCATCTCCAAAAGAGCCGGACGTGACATAA 346
|.||.|| |||.|| |||.||||...|.||.|||.||..|.||.|.|.
RBAM_012720__ 299 ATCAGGT--CGCTCATGGCGACATCATGACAATAGCGGGCAGAGAGACAC 346
BSNT_02176___ 347 TGGCATTTCAAGATCATGAAGGGCAGCGACTTGTGCTGACTGCTGATGAG 396
|.||.|||...|||||||||||.|||||.|||||||||||.|||||.||.
RBAM_012720__ 347 TCGCTTTTTGGGATCATGAAGGACAGCGGCTTGTGCTGACAGCTGACGAA 396
BSNT_02176___ 397 GAAGGAAAAGGATAT-GGCCTG--CCTGTTAAACAGAGCGGCATTCCGGA 443
.|||||||| ||.|| || || .|.||.||.||.||||||||.|||||
RBAM_012720__ 397 AAAGGAAAA-GACATCGG--TGAAGCGGTGAAGCAAAGCGGCATACCGGA 443
BSNT_02176___ 444 AGAATTTTCGTTTCGCGGGTTAGGGCCGGTTGAACTGACTGTGCCATATG 493
|||||.|||.||.|||||..|.||.||.||||||.||||.||.||.||||
RBAM_012720__ 444 AGAATATTCTTTCCGCGGTCTTGGTCCCGTTGAATTGACCGTCCCGTATG 493
BSNT_02176___ 494 CTGAACCAACTTTACACGTATTGACGAATATTCTTGGATTTACAGAAATC 543
|.|||||.||..|.|..||.||.||..||.|.||.||.||.||.|||||
RBAM_012720__ 494 CAGAACCGACGCTGCGTGTGTTAACCGATGTGCTCGGCTTCACTGAAAT- 542
BSNT_02176___ 544 AGCCGTGAACCAGTCGAAGGGCAAGGA-ACCG-----CCGTTA---TTCT 584
||.||| .|||..|||.|.| |||| |.|||| |.||
RBAM_012720__ 543 ---CGGGAA-----AGAAACGCATGAAGACCGGGGCACGGTTACGGTGCT 584
BSNT_02176___ 585 GGAATCAGGAGAAGGCGGTGCTGC-AACGGAAATCCATTTAATAGAAAGA 633
.|||||.|||.|.||.||.|| || .||.|||.|||||.|.||.||||||
RBAM_012720__ 585 CGAATCCGGAAACGGAGGCGC-GCGCACAGAAGTCCATCTCATTGAAAGA 633
BSNT_02176___ 634 AACGATCTTCCGCGCGAGCGTCAAGGCAAAGGGAGTGTTCACCACGTCGC 683
||||||||||||||||||||||..||.|||||.||.||.|||||.||.||
RBAM_012720__ 634 AACGATCTTCCGCGCGAGCGTCCGGGGAAAGGCAGCGTCCACCATGTGGC 683
BSNT_02176___ 684 ATTTCG-GGTAAGAGATGAAGAAGAACTTGCCGGGTGGCACCGGATCATC 732
.||.|| |.|.||| |||||||.||.|||||....||||||||.|||||.
RBAM_012720__ 684 CTTCCGCGTTCAGA-ATGAAGAGGAGCTTGCTTTATGGCACCGCATCATT 732
BSNT_02176___ 733 AGCCG--CGAAGGCTTTAGCAATTCCGGCATTGTGGAGCGCTACTATTTC 780
| || .|||||.||.|||||.||.||||||||.|||||.||.||||||
RBAM_012720__ 733 A--CGAAAGAAGGTTTCAGCAACTCAGGCATTGTAGAGCGTTATTATTTC 780
BSNT_02176___ 781 AAGGCGCTGTATTTCAGAGAACCGAACGGCATTTTGTTCGAGTTATCAAC 830
||.||||||||.|||.|.||.||||||||.|||.||||.||.||.|||||
RBAM_012720__ 781 AAAGCGCTGTACTTCCGGGAGCCGAACGGAATTCTGTTTGAATTGTCAAC 830
BSNT_02176___ 831 GGACGGACCGGGCTTTATGGTAGATGAAAATCTTGATGAGCTTGGCCAAA 880
||||||.||.||.||||||||.||||||||.|.|||.|||||.|||.|||
RBAM_012720__ 831 GGACGGTCCAGGATTTATGGTTGATGAAAAACCTGAAGAGCTAGGCAAAA 880
BSNT_02176___ 881 CGATCGCTCTTCCGCCGTATCTTGAGCATCGAAGAGCAGAAATTGAAGCG 930
||.|.||.||.|||||.|||||.||.||.||..|..|.|||||.|||||.
RBAM_012720__ 881 CGGTTGCGCTCCCGCCTTATCTCGAACACCGCCGTTCTGAAATAGAAGCA 930
BSNT_02176___ 931 AAATTGAAACCGATCCAATAA 951
....||||||||||.||.|||
RBAM_012720__ 931 CGGCTGAAACCGATACAGTAA 951
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