Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02165 and RBAM_012640

See Amino acid alignment / Visit BSNT_02165 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02165___xhlA.1.9828.seq
#    -bsequence dna-align/RBAM_012640___xhlA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02165___xhlA-RBAM_012640___xhlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02165___xhlA-RBAM_012640___xhlA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02165___xhlA
# 2: RBAM_012640___xhlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     202/280 (72.1%)
# Similarity:   202/280 (72.1%)
# Gaps:          26/280 ( 9.3%)
# Score: 775.0
# 
#
#=======================================

BSNT_02165___      1 ----------ATGCAGCAAGAGGCAGATGTGAATGTGTTTCAGCAAGATT     40
                               ||| |.||||.||               |.||..||||.|
RBAM_012640__      1 GTGCTTCTGGATG-AACAAGCGG---------------TGCAAAAAGAAT     34

BSNT_02165___     41 TATTAGACATGAAAGGCGAGCACAAAGCACTTGAGCAGAGGGTTTCTGCA     90
                     |...||.|||.|||||.||.||.||.|..|||||.|||.||||..|.|||
RBAM_012640__     35 TCGCAGGCATCAAAGGTGAACAAAAGGTGCTTGAACAGCGGGTAGCCGCA     84

BSNT_02165___     91 TTAGAACGCGTGTCTGACCGGCAAGACCAGCAAATCATGACGCTGAACGA    140
                     |||||.||.||.||.||||||||.||.||||||||||||||||||||.||
RBAM_012640__     85 TTAGAGCGGGTATCCGACCGGCAGGATCAGCAAATCATGACGCTGAATGA    134

BSNT_02165___    141 AAAATTAAACAAAATTGAAGAAAACACCACGTGGATTAAACGCACCATCA    190
                     ||||.|.|||||||||||.||||||||.||.||||||||.||||||||.|
RBAM_012640__    135 AAAACTGAACAAAATTGACGAAAACACAACATGGATTAAGCGCACCATTA    184

BSNT_02165___    191 CAGGTGCCATCATTACAGCAGTGTCTACAGGCATCATTGGCGGAGCCATC    240
                     ||||.||.|||.|.||||||.|.|..||.|||.|||||||||||||||||
RBAM_012640__    185 CAGGAGCGATCGTGACAGCAATCTGCACGGGCGTCATTGGCGGAGCCATC    234

BSNT_02165___    241 GCCATTATGTACAGCCTGCTGCAGCATTAA    270
                     |||||.|||||||..||||||||..|.|||
RBAM_012640__    235 GCCATCATGTACAATCTGCTGCAAAAGTAA    264


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