Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02116 and RBAM_012510

See Amino acid alignment / Visit BSNT_02116 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02116___xre.1.9828.seq
#    -bsequence dna-align/RBAM_012510___xre.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02116___xre-RBAM_012510___xre.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02116___xre-RBAM_012510___xre.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02116___xre
# 2: RBAM_012510___xre
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     279/343 (81.3%)
# Similarity:   279/343 (81.3%)
# Gaps:           5/343 ( 1.5%)
# Score: 1128.0
# 
#
#=======================================

BSNT_02116___      1 ATGATAGGCGGCAGATTGAAGAGTCTCAGAGGGAAAAGGACACAGGAAGA     50
                     |||||||||||.|||||.||||||||||||||.||.|..||.||||||||
RBAM_012510__      1 ATGATAGGCGGAAGATTAAAGAGTCTCAGAGGAAAGAAAACGCAGGAAGA     50

BSNT_02116___     51 AATCGCATCACACATCGGTGTGTCACGGGCACGATATTCCCACTATGAAA    100
                     |.|||||...||.||||||||.||.||.||..|||||||.||.|||||||
RBAM_012510__     51 AGTCGCAAATCATATCGGTGTCTCGCGCGCCAGATATTCTCATTATGAAA    100

BSNT_02116___    101 ATGGGCGAAGCGAACCTGATTACGACACACTCCAAAAGCTGGCTGATTAC    150
                     |.||.|||...|||||.|||||||||||.||.||||||||.||.||||| 
RBAM_012510__    101 ACGGCCGATCTGAACCCGATTACGACACGCTGCAAAAGCTTGCGGATTA-    149

BSNT_02116___    151 TTTC-AAGTAACGACTGATTACTTATTAACGGGAAAAGACAAAAAATCCG    199
                     |||| ||||..||||||||||.||.|||||.|||||||   ||...||.|
RBAM_012510__    150 TTTCAAAGTGTCGACTGATTATTTGTTAACCGGAAAAG---AACCTTCAG    196

BSNT_02116___    200 ATGACGATATGTTCTCAGATCCGGACCTGCAGCTTGCATACCGCGATATG    249
                     ||||.||.|||||..|.|||||.|||||||||.|.|||||.||.||.|||
RBAM_012510__    197 ATGAAGACATGTTTGCCGATCCCGACCTGCAGATCGCATATCGGGACATG    246

BSNT_02116___    250 CAGGATTTTTCCCCAGAAAGCAAACAGCAGGCCATCGAATTTATCAACTA    299
                     |||||.||||||||.||.|||||||||||||||||.|||||.||.||.||
RBAM_012510__    247 CAGGACTTTTCCCCGGAGAGCAAACAGCAGGCCATTGAATTCATTAATTA    296

BSNT_02116___    300 TTTAAAAGAAAAAGAGAAAAACCGCAAACCGAAAAATAAATAA    342
                     ||||||||||||||||||||||||||..||||||.||||||||
RBAM_012510__    297 TTTAAAAGAAAAAGAGAAAAACCGCAGGCCGAAACATAAATAA    339


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.