Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02115 and RBAM_012500

See Amino acid alignment / Visit BSNT_02115 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02115___xkdA.1.9828.seq
#    -bsequence dna-align/RBAM_012500___xkdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02115___xkdA-RBAM_012500___xkdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02115___xkdA-RBAM_012500___xkdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02115___xkdA
# 2: RBAM_012500___xkdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 605
# Identity:     469/605 (77.5%)
# Similarity:   469/605 (77.5%)
# Gaps:          22/605 ( 3.6%)
# Score: 1802.5
# 
#
#=======================================

BSNT_02115___      1 TTGGGCGATTACTTATCACATCTGGAGGAATACGTTAAAAATTTATACGG     50
                     ||||||||||..|||.|||||||.|||||||||||.|||||.|||||..|
RBAM_012500__      1 TTGGGCGATTTTTTAACACATCTTGAGGAATACGTCAAAAACTTATATTG     50

BSNT_02115___     51 CCGGCTGGGCATCACATCCCCTCATCACATTGACATGCTGAAAATCGCAA    100
                     |||..||||.||.||..||||||..||.|||||.||||.||..||.||.|
RBAM_012500__     51 CCGCATGGGAATGACCGCCCCTCTCCATATTGATATGCAGATGATTGCCA    100

BSNT_02115___    101 AGGATCTGGATATTTGGGTGCATTTTGAGGATATGGGGAGCATGATGGTG    150
                     ||||.||.||.||||||.|.||||||||.||||.|...||.||||||.||
RBAM_012500__    101 AGGAGCTTGACATTTGGATTCATTTTGAAGATACGCACAGTATGATGCTG    150

BSNT_02115___    151 AAATACGACGGCATGTACAGTATCGTATTGAACCAAAAAAAGTCACGGGA    200
                     ||....||||||||||||||.|||||..||||.|||||||||||||..||
RBAM_012500__    151 AAGCGGGACGGCATGTACAGCATCGTCCTGAATCAAAAAAAGTCACCCGA    200

BSNT_02115___    201 AGAGCAATGGGAGGATTTTGGCCATGAGCTGTGCCACGTGTTAAAGCATG    250
                     ||||||||||.|||||||||..||.||.||||||||.|||.|.||||||.
RBAM_012500__    201 AGAGCAATGGCAGGATTTTGCGCACGAACTGTGCCATGTGCTGAAGCATA    250

BSNT_02115___    251 CAGGCAATCATTTTCAGATGAACAAGCTCTTCAGAGAGCTTCAAGAATTC    300
                     |.|||||.||||||||.|||||||||||.||||||||.||.||.|||||.
RBAM_012500__    251 CCGGCAACCATTTTCATATGAACAAGCTGTTCAGAGAACTGCAGGAATTT    300

BSNT_02115___    301 CAGGCAAATCAATTTATGTACCACTTCTGTGTGCCAACCTTTATGCTGTT    350
                     |||||.||.||.|||||||||||||||||||||||.||||||||||||||
RBAM_012500__    301 CAGGCCAACCATTTTATGTACCACTTCTGTGTGCCGACCTTTATGCTGTT    350

BSNT_02115___    351 GCAGATGGAACTGCCGCAATGGAGAAGCCAGGCACTCGCCA---CAATTG    397
                     ..|.|||||.||.||.||..|.||.|||||.||   ||.||   .|||.|
RBAM_012500__    351 AAACATGGAGCTTCCCCAGCGAAGGAGCCACGC---CGTCATTTTAATCG    397

BSNT_02115___    398 CGGCGGTATTCCGGGTAACAAAGG---AATTTGCTGATAAAAGGCTTGAC    444
                     |.||.|..||||||||.||   ||   .||||||.||.||||||||.||.
RBAM_012500__    398 CAGCCGCTTTCCGGGTGAC---GGCATCATTTGCGGAAAAAAGGCTGGAG    444

BSNT_02115___    445 ATGTTTGAACGGCGTAAAGCAGGTATTCAATTTCAGAAGCGGCTCGCTTA    494
                     .||||||||||||||||||||||||||||||||||||||||||||||||.
RBAM_012500__    445 CTGTTTGAACGGCGTAAAGCAGGTATTCAATTTCAGAAGCGGCTCGCTTG    494

BSNT_02115___    495 TTTATTATCTCACAAGCGGCCAAATGCGTACGAGGAAGGCGATCAG-CAG    543
                     |.|.|||||..||||||||||.||||.|||..|.|||.|||..||| || 
RBAM_012500__    495 TCTGTTATCCGACAAGCGGCCGAATGTGTATTATGAAAGCGGACAGACA-    543

BSNT_02115___    544 CACTTGCAGGTCGCTGAGGAAAAAGCGTTATATCATATTGGCAAAAACAT    593
                     ||||||||.|.||||||.||||||.||...|||..|||||   ||||   
RBAM_012500__    544 CACTTGCATGCCGCTGAAGAAAAAACGCCGTATTTTATTG---AAAA---    587

BSNT_02115___    594 CTGA-    597
                      |.| 
RBAM_012500__    588 -TTAG    591


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