Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02107 and RBAM_012450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02107___rapA.1.9828.seq
# -bsequence dna-align/RBAM_012450___rapA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02107___rapA-RBAM_012450___rapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02107___rapA-RBAM_012450___rapA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02107___rapA
# 2: RBAM_012450___rapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity: 957/1139 (84.0%)
# Similarity: 957/1139 (84.0%)
# Gaps: 16/1139 ( 1.4%)
# Score: 4027.5
#
#
#=======================================
BSNT_02107___ 1 ATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATG 50
|||||||||||.|||||||||||||.|||||||||.||||||||||||||
RBAM_012450__ 1 ATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATG 50
BSNT_02107___ 51 GTATACTCATATCCGGCAGTTCCACGTCGCTGAAGCCGAACGGGTCAAGC 100
||||||.||||||||||||||.||||||..|||.||.||.||.|||||.|
RBAM_012450__ 51 GTATACCCATATCCGGCAGTTTCACGTCCTTGAGGCGGAGCGCGTCAAAC 100
BSNT_02107___ 101 TCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTG 150
..||||||||.|||||.||.|||||||||||||||||.||.|||.|||||
RBAM_012450__ 101 GTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTG 150
BSNT_02107___ 151 CTGTATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACAT 200
|||||||||||.||||||||.|||||.||.||||||||||||||||||||
RBAM_012450__ 151 CTGTATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACAT 200
BSNT_02107___ 201 TAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAGTTTTCAGAATTATTAG 250
.|||||.||....||||||.|.||.||||..|||||||||||||||||.|
RBAM_012450__ 201 CAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAGTTTTCAGAATTATTGG 250
BSNT_02107___ 251 AAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTAC 300
|||||||.|||||.||.|||||.||.||||||||.||.||.||.||.|||
RBAM_012450__ 251 AAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTAC 300
BSNT_02107___ 301 TTTAATTTTTTTCGAGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAG 350
|||||||||||||||||||||||.||||||||.|||||.|||||..|.|.
RBAM_012450__ 301 TTTAATTTTTTTCGAGGAATGTACGAATTTAAACAGAAAATGTTCCTAAA 350
BSNT_02107___ 351 TGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCGTCTCGG 400
.||||||||||||||.||||||||.|||||.||.|||||.|||||.||.|
RBAM_012450__ 351 CGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCGTTTCTG 400
BSNT_02107___ 401 ATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTAC 450
||||.||.||||||||.||||||||||||||||||||.||||||||||||
RBAM_012450__ 401 ATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTAC 450
BSNT_02107___ 451 AATTTAAAACAAACCTATGTTTCGATGAGCTACGCCGTTCAGGCATTAGA 500
||..|.|||||||||||.||.||.|||||.||.||||||||.||..|.||
RBAM_012450__ 451 AACCTGAAACAAACCTACGTCTCCATGAGTTATGCCGTTCAAGCCCTTGA 500
BSNT_02107___ 501 AACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAAT 550
|||.||||||..||||||.|||||||.|||||||||||||||||||||||
RBAM_012450__ 501 AACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAAT 550
BSNT_02107___ 551 TCGTTATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTG 600
|||||||||||||.|||||||||||.||||||||||||||||||||||||
RBAM_012450__ 551 TCGTTATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTG 600
BSNT_02107___ 601 CCCCACTTAGAACTGGCTTTAGATCTTGCAAAGAAGGAAGGCAATCCCCG 650
||||||||||||||.|||||||||||||||||..|.||||||||||||||
RBAM_012450__ 601 CCCCACTTAGAACTTGCTTTAGATCTTGCAAAACAAGAAGGCAATCCCCG 650
BSNT_02107___ 651 CCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGG 700
.||.||||||||.|||.|||||||||||||||||||.||.||.|||||||
RBAM_012450__ 651 TCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGG 700
BSNT_02107___ 701 GTGAACT-GCAAAAGGCAGCCGAATACTTTGAGAAATCTGTTTCTATTTG 749
|.||.|| .|.||| |||||||||||.|||||||.|||.|||||.|||||
RBAM_012450__ 701 GAGACCTCTCTAAA-GCAGCCGAATATTTTGAGACATCCGTTTCCATTTG 749
BSNT_02107___ 750 CAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTTAACAC 799
||.|||.|||||||||||||||||||||||||||||.|||||.|||||||
RBAM_012450__ 750 CAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATTAACAC 799
BSNT_02107___ 800 AAGTTCTGTATAAACAAAAAAATGAC-GCCGAAGCGCAAAAAAAGTA--- 845
|.|||||.||||||||.||.|.| || ||||||||..|.||..|.||
RBAM_012450__ 800 AGGTTCTTTATAAACAGAACACT-ACAGCCGAAGCAGAGAAGCAATACCG 848
BSNT_02107___ 846 --TCGTGAAGGATTGGAAATCGCCCGTCAATACAGTGATGAATTATTCGT 893
||| ||.|..| .||||||||..||||||.|||||||||.||.||
RBAM_012450__ 849 CCTCG----GGCTCAG-TATCGCCCGCGAATACAATGATGAATTGTTTGT 893
BSNT_02107___ 894 GGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAG 943
|.|.||.||.|||||||||||||||||||||||.||..|.||.||.|..|
RBAM_012450__ 894 GAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACG 943
BSNT_02107___ 944 AATCGGTCTCACACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCT 993
.|||.|||...|||||.|||.|.|||||.||||||||.|||||||||||.
RBAM_012450__ 944 CATCCGTCAGGCACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCG 993
BSNT_02107___ 994 TATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATATAGAAA-ACG 1042
|||.|.|||||..||||||||||.||||||.||||.||.|| |||| |||
RBAM_012450__ 994 TATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT-GAAACACG 1042
BSNT_02107___ 1043 GACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAA 1092
|||||||.||||||||.||..|.||||||||.||||||||||||||.|||
RBAM_012450__ 1043 GACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAA 1092
BSNT_02107___ 1093 AAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAA 1131
||||||||||||||||||||||||.||||||||||||||
RBAM_012450__ 1093 AAACAAATCCAGAGAGGAGATTGTCTATATGAAATCTAA 1131
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