Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02101 and RBAM_012440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02101___yjoA.1.9828.seq
# -bsequence dna-align/RBAM_012440___yjoA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02101___yjoA-RBAM_012440___yjoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02101___yjoA-RBAM_012440___yjoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02101___yjoA
# 2: RBAM_012440___yjoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity: 360/484 (74.4%)
# Similarity: 360/484 (74.4%)
# Gaps: 35/484 ( 7.2%)
# Score: 1345.0
#
#
#=======================================
BSNT_02101___ 1 ATG--AGC-CAATCCAATCAAATTGTCAGCCATTTTTTATCCCATCGAAA 47
||| ||| ||| |||||..|.||||||||.|||.|.||.||||||||
RBAM_012440__ 1 ATGACAGCACAA---AATCAGTTGGTCAGCCACTTTCTGTCACATCGAAA 47
BSNT_02101___ 48 CGTGACCAATGAGCTTGCCGAAAAAATCAGCAAAGACCATTACAGCTACA 97
|||.||.|.||||||.||.||||||||||||...||.||||||...||||
RBAM_012440__ 48 CGTAACGATTGAGCTGGCGGAAAAAATCAGCCGCGAACATTACGATTACA 97
BSNT_02101___ 98 AACCGGCAGAAACATCAATGTCAGCAGAAGAGCTGGTCAAACACATTCTT 147
|.||||||||.|||||||||||.||..|.||.||.||.||||||||..||
RBAM_012440__ 98 AGCCGGCAGAGACATCAATGTCCGCTCAGGAACTTGTAAAACACATGGTT 147
BSNT_02101___ 148 ACGTCTTTCCACTTGTTCGCAAATGTCATTAAAGAAGGCAATGCCTCACC 197
...|||||.|...||||.|||||.||||||||.||.||.||.||.|||.|
RBAM_012440__ 148 TATTCTTTTCTTATGTTGGCAAACGTCATTAACGACGGAAACGCATCAGC 197
BSNT_02101___ 198 TTTTCAAAACAA---GCAGGAAGAAACAGAAACAGATCTC----AATGTT 240
..|.||.||||| |.|.||||||.||||||||||.||| ||
RBAM_012440__ 198 CATCCAGAACAAACCGAAAGAAGAAGCAGAAACAGACCTCGTCAAA---- 243
BSNT_02101___ 241 CTGGCAAAAACATATACAGAAAAAACGGCCGCTATCCTTGAACAGCTGAC 290
|||||..||||.|.|||.|||||||||.|.|..|||||...|||||||||
RBAM_012440__ 244 CTGGCTGAAACGTGTACTGAAAAAACGACAGACATCCTGTCACAGCTGAC 293
BSNT_02101___ 291 TGAAGAGCAGCTGGACAGAGAAATTGATCTGACATCCGCTTTCGGCAGAA 340
.||||||||||||.||.|.||||||||.|||||..||.||||||||||||
RBAM_012440__ 294 AGAAGAGCAGCTGAACCGCGAAATTGACCTGACCGCCTCTTTCGGCAGAA 343
BSNT_02101___ 341 AAGTCACAGGCCGC-GCGCTGCTTCAGCTTGCAATGGAGCATGAAATTCA 389
||||.||.|| ||| ||.||.|||||||||||.|||||||||||||||||
RBAM_012440__ 344 AAGTGACCGG-CGCGGCTCTCCTTCAGCTTGCCATGGAGCATGAAATTCA 392
BSNT_02101___ 390 CCATAAAGGCAACCTGTTCGTGTATGTGCGGGAAATGGGCCACACTGAGC 439
.|||||||||||.||.|||||||||||..|.||||||||||||||.||.|
RBAM_012440__ 393 TCATAAAGGCAATCTTTTCGTGTATGTCAGAGAAATGGGCCACACGGAAC 442
BSNT_02101___ 440 TTCCTTTCTATCAGCAGCGCATGTAG-------- 465
||||.||.|||||||| |.
RBAM_012440__ 443 TTCCGTTTTATCAGCA--------AAAATCATAA 468
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