Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02101 and RBAM_012440

See Amino acid alignment / Visit BSNT_02101 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02101___yjoA.1.9828.seq
#    -bsequence dna-align/RBAM_012440___yjoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02101___yjoA-RBAM_012440___yjoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02101___yjoA-RBAM_012440___yjoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02101___yjoA
# 2: RBAM_012440___yjoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity:     360/484 (74.4%)
# Similarity:   360/484 (74.4%)
# Gaps:          35/484 ( 7.2%)
# Score: 1345.0
# 
#
#=======================================

BSNT_02101___      1 ATG--AGC-CAATCCAATCAAATTGTCAGCCATTTTTTATCCCATCGAAA     47
                     |||  ||| |||   |||||..|.||||||||.|||.|.||.||||||||
RBAM_012440__      1 ATGACAGCACAA---AATCAGTTGGTCAGCCACTTTCTGTCACATCGAAA     47

BSNT_02101___     48 CGTGACCAATGAGCTTGCCGAAAAAATCAGCAAAGACCATTACAGCTACA     97
                     |||.||.|.||||||.||.||||||||||||...||.||||||...||||
RBAM_012440__     48 CGTAACGATTGAGCTGGCGGAAAAAATCAGCCGCGAACATTACGATTACA     97

BSNT_02101___     98 AACCGGCAGAAACATCAATGTCAGCAGAAGAGCTGGTCAAACACATTCTT    147
                     |.||||||||.|||||||||||.||..|.||.||.||.||||||||..||
RBAM_012440__     98 AGCCGGCAGAGACATCAATGTCCGCTCAGGAACTTGTAAAACACATGGTT    147

BSNT_02101___    148 ACGTCTTTCCACTTGTTCGCAAATGTCATTAAAGAAGGCAATGCCTCACC    197
                     ...|||||.|...||||.|||||.||||||||.||.||.||.||.|||.|
RBAM_012440__    148 TATTCTTTTCTTATGTTGGCAAACGTCATTAACGACGGAAACGCATCAGC    197

BSNT_02101___    198 TTTTCAAAACAA---GCAGGAAGAAACAGAAACAGATCTC----AATGTT    240
                     ..|.||.|||||   |.|.||||||.||||||||||.|||    ||    
RBAM_012440__    198 CATCCAGAACAAACCGAAAGAAGAAGCAGAAACAGACCTCGTCAAA----    243

BSNT_02101___    241 CTGGCAAAAACATATACAGAAAAAACGGCCGCTATCCTTGAACAGCTGAC    290
                     |||||..||||.|.|||.|||||||||.|.|..|||||...|||||||||
RBAM_012440__    244 CTGGCTGAAACGTGTACTGAAAAAACGACAGACATCCTGTCACAGCTGAC    293

BSNT_02101___    291 TGAAGAGCAGCTGGACAGAGAAATTGATCTGACATCCGCTTTCGGCAGAA    340
                     .||||||||||||.||.|.||||||||.|||||..||.||||||||||||
RBAM_012440__    294 AGAAGAGCAGCTGAACCGCGAAATTGACCTGACCGCCTCTTTCGGCAGAA    343

BSNT_02101___    341 AAGTCACAGGCCGC-GCGCTGCTTCAGCTTGCAATGGAGCATGAAATTCA    389
                     ||||.||.|| ||| ||.||.|||||||||||.|||||||||||||||||
RBAM_012440__    344 AAGTGACCGG-CGCGGCTCTCCTTCAGCTTGCCATGGAGCATGAAATTCA    392

BSNT_02101___    390 CCATAAAGGCAACCTGTTCGTGTATGTGCGGGAAATGGGCCACACTGAGC    439
                     .|||||||||||.||.|||||||||||..|.||||||||||||||.||.|
RBAM_012440__    393 TCATAAAGGCAATCTTTTCGTGTATGTCAGAGAAATGGGCCACACGGAAC    442

BSNT_02101___    440 TTCCTTTCTATCAGCAGCGCATGTAG--------    465
                     ||||.||.||||||||        |.        
RBAM_012440__    443 TTCCGTTTTATCAGCA--------AAAATCATAA    468


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