Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02098 and RBAM_012410
See
Amino acid alignment /
Visit
BSNT_02098 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02098___uxaB.1.9828.seq
# -bsequence dna-align/RBAM_012410___uxaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02098___uxaB-RBAM_012410___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-RBAM_012410___uxaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: RBAM_012410___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1502
# Identity: 1020/1502 (67.9%)
# Similarity: 1020/1502 (67.9%)
# Gaps: 115/1502 ( 7.7%)
# Score: 3175.5
#
#
#=======================================
BSNT_02098___ 1 ATGCAGAAACTGAATAAAAATGTGTACGATCACTATACTCGGTATCCAGA 50
.|||.|||.|||||||||||..|||.||.|.|.||.|.||..|||||.||
RBAM_012410__ 1 TTGCGGAAGCTGAATAAAAAGATGTGCGGTGAATACATTCAATATCCTGA 50
BSNT_02098___ 51 AAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGATTTGTTGATT 100
||||.|.||.||.|||||.|||||.||||||.|.||||..||.|..||.|
RBAM_012410__ 51 AAAAGTCCTTCAGTTCGGCGAAGGCAACTTTTTGCGGGCCTTCGCAGACT 100
BSNT_02098___ 101 GGCAGATTGATCAATTGAATCAACACACTGATTTTAATGGGAGCGTGGCA 150
|||||||.||||||||||||||||..||.||||||||.||.|||||.|..
RBAM_012410__ 101 GGCAGATCGATCAATTGAATCAACTGACGGATTTTAACGGAAGCGTTGTC 150
BSNT_02098___ 151 GTTGTCCAGCCAAGAGGCTCAGAAAAAATCAAACGATTAAATCAGCAAGA 200
|..||.|||||.||||||||.||.|||||||||||.|||||..|.||.||
RBAM_012410__ 151 GCCGTACAGCCGAGAGGCTCTGAGAAAATCAAACGTTTAAACGAACAGGA 200
BSNT_02098___ 201 TGGATTATATACGCTTTTTTTACAAGGAATGAAAGACGGAGAAGCCG--T 248
.||.||||.||||||||||||.||.||.||.||.||.||| ||.||| |
RBAM_012410__ 201 CGGTTTATTTACGCTTTTTTTGCAGGGGATAAAGGATGGA-AAACCGGCT 249
BSNT_02098___ 249 AAACGAGCATATGATTATCAACTCAATCAGCCGGGGAATTGACCTGTTTT 298
.|| ||.||.|.|||..||||.||.||||||||.||.|||||.||.||||
RBAM_012410__ 250 GAA-GAACACACGATCGTCAAATCCATCAGCCGCGGCATTGATCTTTTTT 298
BSNT_02098___ 299 CTGATTATGAAGCATACAAAGAATTGGCATCAAGCGAAAG--GCTTCGGT 346
||||.|||||..|.|..|||....|||||.|| |.|.|| ||||||.|
RBAM_012410__ 299 CTGACTATGATTCCTTTAAACGGCTGGCAGCA--CAAGAGGAGCTTCGTT 346
BSNT_02098___ 347 TTATTATCTCCAACACCACTGAGGCTGGGATT---GTATGTGATGAAAAA 393
||||.||.|||||.||.||.||.|| ||||.| ||.||.|| ||...
RBAM_012410__ 347 TTATCATTTCCAATACGACAGAAGC-GGGAATCACGTTTGAGA--AAGGC 393
BSNT_02098___ 394 GATCGTTTAGAGGATAGGCCGCAAAAAACATTCCCTGGGAAATTAACTGC 443
||.||..|.||||||||.||.||||||||||||||.|||||||||.|.||
RBAM_012410__ 394 GACCGGCTTGAGGATAGACCTCAAAAAACATTCCCCGGGAAATTAGCGGC 443
BSNT_02098___ 444 ATTTCTCTACTTCCGCTTTCAGGCTTTTAAAGGAGA-TCAGACAAAAGGG 492
.||.||.||.|||||||.|.||||.|||...||.|| .|.|| .||||||
RBAM_012410__ 444 GTTCCTTTATTTCCGCTATAAGGCATTTGCGGGTGACGCCGA-GAAAGGG 492
BSNT_02098___ 493 TGTGTCCTAATCCCATGTGAACTGATTG-AGAACAACGG-CGAAAAGCTG 540
||..|..|..|.||||||||||||.|.| |||| ||||| ||.||| |||
RBAM_012410__ 493 TGCATTATGCTTCCATGTGAACTGGTCGAAGAA-AACGGACGGAAA-CTG 540
BSNT_02098___ 541 AAGGAAACGGTTCTTCATTATGCAGGTCTGTGGAAGCTGGAGGAAGGATT 590
||||...|.||.|||||.|||||.||.||||||.|||||||....|..||
RBAM_012410__ 541 AAGGCGGCCGTGCTTCAATATGCCGGGCTGTGGGAGCTGGAACCTGATTT 590
BSNT_02098___ 591 TACACAGTGGATTCATGAGGCCAATACATTTTGTAATAGTTTAGTAGACC 640
|||.||.|||||||||||.||.||.|..||.||.||||...|.||.||.|
RBAM_012410__ 591 TACTCAATGGATTCATGACGCGAACATCTTCTGCAATACCCTCGTGGATC 640
BSNT_02098___ 641 GGATTGTTCCGGGTTTTCCCGTCGACAGCATTGATGAGATCACGGCGGA- 689
|.||||||||.||.|||||.| ||||| ||.|||||
RBAM_012410__ 641 GTATTGTTCCCGGATTTCCTG---------TTGAT------ACCGCGGAA 675
BSNT_02098___ 690 --------------TCTTGGCTATCAGGATGATTTGATAGTTGTGGGAGA 725
|||.||.||..|.||...|.||.|.||.||.||.||
RBAM_012410__ 676 GAACTTACCGATTTTCTCGGATACGAAGACCGTCTGCTTGTGGTTGGTGA 725
BSNT_02098___ 726 GCAATATTATTTATGGGTTATCGAGGGGCCTGATTGGATTGGAAAAGAAC 775
|||.||||||||.|||||.||.||.|||||.||...|.||...||.||.|
RBAM_012410__ 726 GCATTATTATTTGTGGGTGATAGAAGGGCCGGAACAGCTTCAGAATGAGC 775
BSNT_02098___ 776 TTCCCTTTGCGGCTGCAGGGCTCCATACAAAGAT--CGTCAGCGACCTCA 823
||||.|||||.|..||.|||||..|..||..||| |||| .|||||.|
RBAM_012410__ 776 TTCCTTTTGCTGAGGCCGGGCTGAACGCACTGATCACGTC--TGACCTTA 823
BSNT_02098___ 824 CCCCATACCGGACTAAAAAAGTAAGGATTTTAAATGGCGCTCATACAGCA 873
|..|.|||.||||.|||||.||.||.||.|||||.||||||||.||.|||
RBAM_012410__ 824 CGTCTTACAGGACAAAAAAGGTGAGAATCTTAAACGGCGCTCACACGGCA 873
BSNT_02098___ 874 ATGACGCCAGTGGCTTTATTATACGGCTTAAAAACTGTTAGGGATGCTGT 923
.||.||||||||||||||.|||||||..|..||||.||..||||.||.|.
RBAM_012410__ 874 TTGGCGCCAGTGGCTTTACTATACGGACTGCAAACCGTCCGGGAAGCGGC 923
BSNT_02098___ 924 CGAGCATCCGGAAGTT---GGGC-GATTTATAAGAGAGCTGATTGACGAC 969
.||||| || ||.| |||| ||||.||...|||||||||..|.||.
RBAM_012410__ 924 TGAGCA--CG--AGGTGACGGGCAGATTCATCGAAGAGCTGATCAATGAA 969
BSNT_02098___ 970 GAAATTCTTCCTGTTTTAAAAATGGAAGGTCTTTCTCAGTATGCTGACGA 1019
|||||.||.|||||..|..|||||||.|||.|..|.||.||.||.|..||
RBAM_012410__ 970 GAAATCCTCCCTGTGCTGCAAATGGAGGGTGTCACCCAATACGCGGCAGA 1019
BSNT_02098___ 1020 TGTGCTGAACCGTTTTAAAAACCCGTATATTAAGCATTACCTGGAAAGCA 1069
||||.|..|.||.|||||||||||.|||||..|.|||||.|||.||||||
RBAM_012410__ 1020 TGTGTTACAGCGGTTTAAAAACCCTTATATCCAACATTATCTGCAAAGCA 1069
BSNT_02098___ 1070 TTGCATTGAGCTCCGTTTCCAAATTCAAAACGAGAAACCTGCCGACTCTT 1119
||.|..|.|.|.|||...|.|||||||||||.|||||.||||||||.||.
RBAM_012410__ 1070 TTACCCTTAACGCCGCCGCGAAATTCAAAACAAGAAATCTGCCGACGCTG 1119
BSNT_02098___ 1120 AAGGAATATGCTGAACAAAAGGGACAGCTTCCTGA-ACGCTTGGTGTTTT 1168
||||..|||...|||||..||||.|.|||.||||| |.|| ||||.||||
RBAM_012410__ 1120 AAGGCTTATATCGAACAGGAGGGCCGGCTACCTGAGAAGC-TGGTATTTT 1168
BSNT_02098___ 1169 CTTTCAGCGCTCTTCTGTATTTTTATCATAAT--AATGAGACATTGCA-- 1214
|.||||||||..|..|.||| |||||.| ||.| |||....||
RBAM_012410__ 1169 CGTTCAGCGCCATGATCTAT-----TCATACTGGAACG-GACCGAACAAA 1212
BSNT_02098___ 1215 --GGATGATCCGGC-----AGTGCTTCAA--TTTTTCAAA----GAGGT- 1250
||.||| |||| .||.||| || .|||||||| |.|||
RBAM_012410__ 1213 CCGGCTGA--CGGCGAGGGGGTTCTT-AACCGTTTTCAAATGGCGCGGTC 1259
BSNT_02098___ 1251 ---TTGGTGTCAGGAGGATGACGACATGCTTC-----GGATTGCATCAAG 1292
||| || |.||.||.|||.||| |.|| |.||.|
RBAM_012410__ 1260 CCGTTG----CA-----AAGATGATATGTTTCAAGCGGCAT--CTTCTA- 1297
BSNT_02098___ 1293 AGTGTTAGGCGAACAGCGGCTGTGGGGGGCAG-ATCTCAATGAGATACCG 1341
|.|||||.|||.||||.|||| |||||.|| |.||.|||.|..|.|||
RBAM_012410__ 1298 --TATTAGGAGAAGAGCGACTGT-GGGGGAAGAACCTGAATCATCTTCCG 1344
BSNT_02098___ 1342 AAGCTGACTGATAGAGTCGCTGTTTACTTGAATCTTATTCATGAGCTGGG 1391
..|||||||||..||...|||.|||...||..|.|.||||||.|||.|||
RBAM_012410__ 1345 GGGCTGACTGAACGAACGGCTTTTTTTCTGTCTGTCATTCATAAGCGGGG 1394
BSNT_02098___ 1392 CATGCAGCGGGCTCTTGAACAATACTGCATACAAGAGGGAGAGGTACGTT 1441
.|||.|||..||..|..|..|||.||||....||.||||.||.|||...|
RBAM_012410__ 1395 TATGAAGCATGCGTTACATGAATGCTGCGGCAAAAAGGGGGAAGTAAAAT 1444
BSNT_02098___ 1442 GA 1443
||
RBAM_012410__ 1445 GA 1446
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.