Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02097 and RBAM_012400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02097___exuR.1.9828.seq
# -bsequence dna-align/RBAM_012400___exuR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02097___exuR-RBAM_012400___exuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02097___exuR-RBAM_012400___exuR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02097___exuR
# 2: RBAM_012400___exuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1025
# Identity: 772/1025 (75.3%)
# Similarity: 772/1025 (75.3%)
# Gaps: 49/1025 ( 4.8%)
# Score: 2902.0
#
#
#=======================================
BSNT_02097___ 1 ATGGTAACCATAAAAGATATCGCAAAACTCGCAAACGTATCCCACACAAC 50
||||||||||||||||||||||||||||||||.|||||||||||||||||
RBAM_012400__ 1 ATGGTAACCATAAAAGATATCGCAAAACTCGCCAACGTATCCCACACAAC 50
BSNT_02097___ 51 CGTTTCCAGAGCACTCAACAACAGCCCTTACATCAAAGAACATACGAAGA 100
|||.|||.|.|||||.|||..||||||.|||||.|||||.|||||.||..
RBAM_012400__ 51 CGTATCCCGGGCACTTAACGGCAGCCCCTACATTAAAGAGCATACAAAAC 100
BSNT_02097___ 101 AAAAGATATTAGAGCTAGCAGAGCAGCTCAACTATACACCAAATGTAAAT 150
|.||.|||||||||||.||....|||||.||.||.|||||.|||||||||
RBAM_012400__ 101 AGAAAATATTAGAGCTCGCTTCCCAGCTGAATTACACACCGAATGTAAAT 150
BSNT_02097___ 151 GCGAAAAGTCTGGCGATGCAAAAGTCGCATACGATCGGGCTATTCTTTAC 200
||.|||||.||.||.|||||||||||.|||||||||||.||.||.|||||
RBAM_012400__ 151 GCAAAAAGCCTTGCCATGCAAAAGTCCCATACGATCGGACTGTTTTTTAC 200
BSNT_02097___ 201 AAGCATTACAAACGGAACCTCACACAGCTTCTTTGCAGACACAATCAAAG 250
||||||.|||||||||||||||||||||||.|||.|.||.||.|||||||
RBAM_012400__ 201 AAGCATCACAAACGGAACCTCACACAGCTTTTTTTCCGATACCATCAAAG 250
BSNT_02097___ 251 GCGTCAATCAAGCCATAAGTGAGGATTACAATCTGTATGTGCGCGGCATT 300
|.||.||.|...|.||.||||||||.||||||.|||..||.||||..|||
RBAM_012400__ 251 GTGTAAACCGCACAATCAGTGAGGAATACAATTTGTTCGTCCGCGCGATT 300
BSNT_02097___ 301 GATGATCTGAAAAACTATGACTCCGTTACACCGATGAGATATGACGGCAT 350
||.||.|||||||.||.|||..||.||||.||.|||||||||||.||.||
RBAM_012400__ 301 GACGACCTGAAAAGCTTTGAAACCATTACGCCCATGAGATATGATGGAAT 350
BSNT_02097___ 351 CATTTTAATGAGCCAAAGTGACATTGATAATTCTTTTATTTACCATATTC 400
||||||||||||||||||.||||.|||||||||.||||||||.|||||.|
RBAM_012400__ 351 CATTTTAATGAGCCAAAGCGACAGTGATAATTCATTTATTTATCATATCC 400
BSNT_02097___ 401 GCGAAAAAAACATTCCGCTTGTCGTGCTGAATCGTGATATTGATGATCGC 450
||||.||||||||.|||||||||||||||||.||.||.||||||||.||.
RBAM_012400__ 401 GCGAGAAAAACATCCCGCTTGTCGTGCTGAACCGGGACATTGATGACCGG 450
BSNT_02097___ 451 ACCATCACGAATATTTTGTCCAATGACAAGGAAGGCTCTCA-AGAAGCTG 499
|.||||||||||||..||||.||.||.||.||.||||| || |.|.||.|
RBAM_012400__ 451 AGCATCACGAATATCCTGTCAAACGATAAAGAGGGCTC-CAGACAGGCGG 499
BSNT_02097___ 500 TAGAATACTTCATTCAGTC-----CGGCCATCA-AGACATCGCCATCATC 543
|.||.|.|.|.| || |||.|| || |||.|||||.|||||.
RBAM_012400__ 500 TCGACTGCCTGA-----TCGCAAACGGACA-CAGAGATATCGCGATCATT 543
BSNT_02097___ 544 GAGGGGATCGAAGGCTTTAAATC--CTCCCAGCAGCGAAAGGAAGGCTAC 591
|||||.|..|||||.||.|..|| ||.| .|||||.||.||||||||.
RBAM_012400__ 544 GAGGGAAAGGAAGGATTCAGGTCAACTTC--TCAGCGGAAAGAAGGCTAT 591
BSNT_02097___ 592 TT---ATCTGCACTGATTCAACATCATATTCCGATCAAGCATGAATACAG 638
|| |||| .|.|||.|.|||..|||.|||||.||||||||||||||
RBAM_012400__ 592 TTGACATCT---TTAATTGATCATTCTATCCCGATTAAGCATGAATACAG 638
BSNT_02097___ 639 TGTCAAAGGACAGTACGATATGGAAAGCGGCTTTCAAGCGATGGAGAGGC 688
|||.|||||.|..||.|||||||||||||||..|||.||||||||.|..|
RBAM_012400__ 639 TGTAAAAGGCCGCTATGATATGGAAAGCGGCAGTCAGGCGATGGAAAAAC 688
BSNT_02097___ 689 TGCTGGCACTGCCGAAT--CCTCCAACCGCTGTTTTTTGTTCGAATGATG 736
|..||||.||.| ||| ||.||.||.||||||||||||||.||.||||
RBAM_012400__ 689 TCTTGGCGCTTC--AATCACCGCCTACGGCTGTTTTTTGTTCAAACGATG 736
BSNT_02097___ 737 ACATGGCAATCGGAGCGATGAATGCGATATTCGCAAAGGGCCTGCGCGTT 786
|.|||||.|||||.||||||||.||.||.|||||.||.||||||..||||
RBAM_012400__ 737 ATATGGCGATCGGGGCGATGAACGCCATTTTCGCCAAAGGCCTGAACGTT 786
BSNT_02097___ 787 CCTGATGATATTTCGGTGATCGGGTTTGATGATATTGGGTTTTCACAGTA 836
||.||.|||||.||.||.||||||||||||||.||.||..||||.||.||
RBAM_012400__ 787 CCGGAAGATATATCCGTTATCGGGTTTGATGACATCGGCATTTCCCAATA 836
BSNT_02097___ 837 CATCACGCCAAGACTTACAACAGTAAAGCGCCCAGTGGAGAAAATCAGCG 886
|||.|||||.||.|||.|.||||||||.|||||.||.||.||.||||||.
RBAM_012400__ 837 CATGACGCCGAGGCTTTCGACAGTAAAACGCCCGGTTGAAAACATCAGCA 886
BSNT_02097___ 887 TGCTCGGTGCGCAAAAACTCTTGTCTCTGATCAGCGAGCCCGAAACAAAA 936
|.|||||.||..|.|||.|.|||.|.||.|||..|||.||.||.||....
RBAM_012400__ 887 TACTCGGCGCAGAGAAAATTTTGGCGCTAATCGCCGACCCGGATACGGCG 936
BSNT_02097___ 937 GCAGAAAAAATCTTGGAAAACACAAAATTCATGGTGCGTGATTC------ 980
||.||||||||.|..||||||||..|..|.|||.|..|.|||||
RBAM_012400__ 937 GCGGAAAAAATATACGAAAACACCGAGGTGATGATAAGAGATTCCATTAA 986
BSNT_02097___ 981 ---AGTCAGACGATTGACGACGTGA 1002
|.|||.|..|
RBAM_012400__ 987 AAAACTCACATAA------------ 999
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