Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02088 and RBAM_012390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02088___yjmB.1.9828.seq
# -bsequence dna-align/RBAM_012390___yjmB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02088___yjmB-RBAM_012390___yjmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02088___yjmB-RBAM_012390___yjmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02088___yjmB
# 2: RBAM_012390___yjmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1438
# Identity: 1013/1438 (70.4%)
# Similarity: 1013/1438 (70.4%)
# Gaps: 110/1438 ( 7.6%)
# Score: 3427.5
#
#
#=======================================
BSNT_02088___ 1 ATGCGAACTGAACTGGCAAATAAGGTTGTGTCGGTCGAAA---------- 40
||| |.||| ||||.|.||||..|
RBAM_012390__ 1 ATG---------------AGTAA---TGTGCCTGTCGTGACAGCACCTGC 32
BSNT_02088___ 41 CGGAAAA---AAGGCTTTCAT----------TGAAAGAGAAAATGTCCTA 77
||.|||| |||| ..||| |||||||.|||.|.||.||
RBAM_012390__ 33 CGCAAAAGTGAAGG--AGCATAAGCTGAGTCTGAAAGAAAAAGTATCTTA 80
BSNT_02088___ 78 TGGCTTTGGTGATTTTGGCAACGGTTTTATGTTTGATCTCGGCCAGATTT 127
|||.|||||.||||||||.|||||.|||||||||||||||||.|||||.|
RBAM_012390__ 81 TGGTTTTGGAGATTTTGGGAACGGATTTATGTTTGATCTCGGGCAGATCT 130
BSNT_02088___ 128 ATTTATTGAAGTATTTCACTGATGTAGCGGGAATCCCCGCTGCGATGGCC 177
||||..||||||.||||||.|||||.||.||.||.||.||.|||.|.|||
RBAM_012390__ 131 ATTTGCTGAAGTTTTTCACAGATGTCGCAGGCATTCCGGCAGCGTTCGCC 180
BSNT_02088___ 178 GGCGGCATTTTTTTAGTCAGTAAGCTGTTTGCAGCGATAACAGATCCAAT 227
|||.|.||||||||.|||||.|||||||||||.||..|.||.|||||.||
RBAM_012390__ 181 GGCAGTATTTTTTTGGTCAGCAAGCTGTTTGCGGCTGTGACTGATCCGAT 230
BSNT_02088___ 228 TGTCGGCTCATCAATCGATTATCGCAAAAACATCGGCAAACGGGGGAAAT 277
|||||||||..|.||.||.||..|.|||||.||||||...||||||||||
RBAM_012390__ 231 TGTCGGCTCGGCCATTGACTACAGAAAAAAGATCGGCCCCCGGGGGAAAT 280
BSNT_02088___ 278 TCAGGCCTTATCTATTAATCGGCAGCATCGTGCTTGCGGTGCTTACTGTT 327
|||||||.||..|||||.||||.||.||..|.||||||||..|.||.||.
RBAM_012390__ 281 TCAGGCCGTACTTATTATTCGGAAGTATTATTCTTGCGGTCATGACCGTA 330
BSNT_02088___ 328 CTTATTTTTCTGTCTCCCAATGTATCAACG--ACCGGAAAACTGATATAT 375
.|.||||||.||||.||..|.| |.|.|| |||.|.||.||..|.||.
RBAM_012390__ 331 TTGATTTTTGTGTCACCGGACG--TGAGCGTCACCTGGAAGCTTGTGTAC 378
BSNT_02088___ 376 GCATATGCATCCTATATGATTTGGGGCATCGGCTATTCGTTTGTGAATAT 425
||.|||||.||.||.|||.|.|||||..|||..|||||.||.||.|||||
RBAM_012390__ 379 GCCTATGCTTCTTACATGCTGTGGGGGGTCGCTTATTCTTTCGTCAATAT 428
BSNT_02088___ 426 TCCGTACGGCTCATTAGGGGCAGCGATGACTCAAAATTCTGAGGACCGGA 475
||||||||||||..|.||.||.||.||.||.||..||.|.||||||.|.|
RBAM_012390__ 429 TCCGTACGGCTCCCTCGGCGCGGCCATTACACAGGATGCGGAGGACAGAA 478
BSNT_02088___ 476 CCTCCATTTCGACGTTCCGCCAAATCGGATCACTTGGCGCCTTGTTTATC 525
|..|..||||..|.||||||||.|||||.||.||.|||||..||.|.||.
RBAM_012390__ 479 CGGCGCTTTCCGCATTCCGCCAGATCGGCTCCCTCGGCGCGCTGCTCATT 528
BSNT_02088___ 526 ACAAGTGTGGCCGTGATGCCGCTGCTCGTCAAGTTTGATAA---TCCGAA 572
||||||||...|||.||.|||.|.||.||..|.|||||||| || |
RBAM_012390__ 529 ACAAGTGTCATCGTCATCCCGATTCTTGTTCATTTTGATAACGTTC---A 575
BSNT_02088___ 573 GGTCGGCTACCCGGTGGTCATGGGCTTGTTCGCCGCGCTCGG---TGTGT 619
..||||||||||||..||||||||..||.|.||||...|||| .|.|
RBAM_012390__ 576 CATCGGCTACCCGGCAGTCATGGGAATGATGGCCGTAATCGGAATCGCG- 624
BSNT_02088___ 620 TTTGGTTTTAT-ATTTGCTACCGCAACTGCAAAGAGCGCATTGTCATATC 668
||.||||| ||.||||||||.|||||||||||..|.|| ||||
RBAM_012390__ 625 ---GGATTTATGATCTGCTACCGAAACTGCAAAGAAAGAAT-----TATC 666
BSNT_02088___ 669 G-----GAAGCACCCAAAGAAAAATTAACACTCT-CATC-TGTCG----T 707
| |||||.||.|||||||| .||.| |.|| ||||| |
RBAM_012390__ 667 GTCCGTGAAGCGCCGAAAGAAAA------GCTGTCCGTCATGTCGGTTTT 710
BSNT_02088___ 708 CAAAACATTTATTACAAATAAACCGCTGTTAACCCTTGTCCTGATGACGA 757
||||...|||||....||.||||||||..|.|||.|.||..|.|||||||
RBAM_012390__ 711 CAAATGCTTTATCGGCAACAAACCGCTTCTGACCGTCGTTTTCATGACGA 760
BSNT_02088___ 758 TTTTTTCAATTTCCGCATACAACATTAAATCCGCCATGCTCGTCTATTTC 807
||||.|||||.||.|||||.||||||||||||||.|||||.||.||.|||
RBAM_012390__ 761 TTTTCTCAATATCGGCATATAACATTAAATCCGCTATGCTTGTTTACTTC 810
BSNT_02088___ 808 GCACAATATAACTTGGGCAATGTTGAATTAATGGCTTATATGAACTTCAT 857
||.||.||.||..|...|||||..||..|.|||.|.||.||||..||.||
RBAM_012390__ 811 GCCCAGTACAATCTCAACAATGCGGAGCTGATGTCCTACATGAGTTTTAT 860
BSNT_02088___ 858 CATTATTGGTTCTTCCTTTTTGGGCGTCGTATTCCTACCAAAGCTCGTCA 907
|||.||.||||||||.|||||.||.||..|.||..|.||.||.|||||||
RBAM_012390__ 861 CATCATCGGTTCTTCATTTTTAGGTGTTTTGTTTATGCCGAAACTCGTCA 910
BSNT_02088___ 908 AGATGTTT-GGAAAGAAACGAACGGCAATGATCGGCTTCGGCATCAGTGT 956
| |.|||| |||||.||.|.|||||..||||||||.||.|.|.||||
RBAM_012390__ 911 A-ACGTTTCGGAAAAAAGCAAACGGTGATGATCGGTTTTGCCGTCAG--- 956
BSNT_02088___ 957 GGCCGCGGATCTGA-----TCAACTTTATG-CTTCCATCTAACGTTTATG 1000
.||||||| |||| |.|| |||.|| ||.||.||.||.||.|||.
RBAM_012390__ 957 CGCCGCGG--CTGATGCGCTGAA-TTTCTGTCTGCCGTCAAATGTATATA 1003
BSNT_02088___ 1001 TGTTTACAATTCTCGCCAGTATCGCCTTTATCGGAATCAGTATCCCAAAT 1050
|.|||||.....|.||.||.||.||.||||||||.|||||.||.|||||.
RBAM_012390__ 1004 TCTTTACGGCGTTAGCGAGCATTGCTTTTATCGGGATCAGCATACCAAAC 1053
BSNT_02088___ 1051 GGCATCACGTGGGCTCTTGTCTCCGATATTATCGACTATGGCGAATGGAA 1100
|||||.||||||||.|||||.||.||.|||||.||.||.||.||||||||
RBAM_012390__ 1054 GGCATTACGTGGGCGCTTGTGTCGGACATTATTGATTACGGGGAATGGAA 1103
BSNT_02088___ 1101 ATCCGGTGAACGGAAGGAAGCAACGACATATTCACTTTTCAATTTCTCAA 1150
..|.||||||||||||||.||.|||||||||||.||||||||.|||||.|
RBAM_012390__ 1104 GACGGGTGAACGGAAGGAGGCGACGACATATTCGCTTTTCAACTTCTCCA 1153
BSNT_02088___ 1151 GAAAGCTTGCTCAATCTTTGTCTGGCTTTCTCTCGGGGATCGGTTTGGGG 1200
||||.||.||.||||||||.||.||.|||||.||.||.|||||..||.|.
RBAM_012390__ 1154 GAAAACTCGCCCAATCTTTATCAGGTTTTCTTTCAGGCATCGGGCTGAGC 1203
BSNT_02088___ 1201 ATTATCGGCTATGTGCCGAATGCAGTC-CAGACAGCACAGG--CGCTGAT 1247
.||||.||||||.|.||||||||| || |||||| |.||| |||||||
RBAM_012390__ 1204 GTTATTGGCTATATCCCGAATGCA-TCTCAGACA--AAAGGCACGCTGAT 1250
BSNT_02088___ 1248 TGGCATCAAAGCGCTGCTTCTTCTGTATCCGGCCATTGCTTTGGCATTAG 1297
.||.||.||||.|||.||.||.|||||.|||||..|.|||||.||.|..|
RBAM_012390__ 1251 CGGGATTAAAGGGCTTCTGCTGCTGTACCCGGCTTTCGCTTTAGCGTGCG 1300
BSNT_02088___ 1298 CGATGTTCATTATCGGCTTTCTTTATAAACTCACAGACCAGCAGCATGCT 1347
|.|||.|.||||||||.||..|.||||||||.||.||||.|||||||||.
RBAM_012390__ 1301 CCATGCTGATTATCGGTTTAATGTATAAACTGACGGACCGGCAGCATGCC 1350
BSNT_02088___ 1348 CAGATCGTTCAGGATCTT-CATCA---AAAGAGCTGA- 1380
.||.|||||||||| ||| ||||| ||| |.||.|
RBAM_012390__ 1351 GAGCTCGTTCAGGA-CTTACATCATGCAAA-ACCTTAA 1386
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