Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02087 and RBAM_012380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02087___uxaC.1.9828.seq
# -bsequence dna-align/RBAM_012380___uxaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02087___uxaC-RBAM_012380___uxaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02087___uxaC-RBAM_012380___uxaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02087___uxaC
# 2: RBAM_012380___uxaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1490
# Identity: 1038/1490 (69.7%)
# Similarity: 1038/1490 (69.7%)
# Gaps: 142/1490 ( 9.5%)
# Score: 3600.0
#
#
#=======================================
BSNT_02087___ 1 ATGAAAGACGGTGAGGACATGGAACCCTTCATGGGCGAAAACTTTTTATT 50
|||| ||.|.||.|||||.||..|.||||||.|
RBAM_012380__ 1 ----------GTGA--------AAGCTTTTATGGGTGATGATTTTTTACT 32
BSNT_02087___ 51 GAAAAATGAAACCGCTGTCAGTCTCTATCACAATTATGC-GAAAGACATG 99
|||.|.|.||||.||.||.|..||.||.|...|.||.|| |||| |||||
RBAM_012380__ 33 GAATAGTAAAACGGCCGTAAAGCTGTACCGGGAATACGCTGAAA-ACATG 81
BSNT_02087___ 100 CCAATTATTGATTACCACTGCCACTTAAGTCCGAAAGAAATCTATGAAAA 149
||.||.||||||||.|||||.||||||||.||.||.||||||||||||||
RBAM_012380__ 82 CCGATCATTGATTATCACTGTCACTTAAGCCCAAAGGAAATCTATGAAAA 131
BSNT_02087___ 150 TAGTACATTTCAAAAC-ATCACGGAAGCCTGGTTGTATGGTGACCATTAT 198
||..|| .|||..||| ||.|||||.||.|||.|.||.||||||||.||.
RBAM_012380__ 132 TAAAAC-CTTCGCAACGATTACGGAGGCATGGCTTTACGGTGACCACTAC 180
BSNT_02087___ 199 AAATGGCGCATCATGAGAGCCAATGGAATTGAGGAGACATACATCACCGG 248
||.|||||.||||||||.|||||.||.|||||.|||...|.|||.|||||
RBAM_012380__ 181 AAGTGGCGGATCATGAGGGCCAACGGCATTGAAGAGCGCTGCATTACCGG 230
BSNT_02087___ 249 AGATGCGCCTGATGAGGAGAAATTTATGGCTTGGGCGAAAACCGTGCCGA 298
|.|.||..|.|||||.|||||.|||.|.||.|||||.|||||.|||||||
RBAM_012380__ 231 AAACGCTTCAGATGAAGAGAAGTTTTTCGCCTGGGCAAAAACGGTGCCGA 280
BSNT_02087___ 299 TGGCGATTGGCAATCCGCTCTACAACTGGACTCACTTAGAATTGCAGCGT 348
|||||||.|||||||||||.||||.||||||.||.|||||..|||||||.
RBAM_012380__ 281 TGGCGATAGGCAATCCGCTGTACAGCTGGACGCATTTAGAGCTGCAGCGC 330
BSNT_02087___ 349 TTTTTTGGCATTTATGAGATTTTAAACGAGAA---GTCCGGGCCGGCTAT 395
|..||.|||||||||||..|.||.||.||.|| |.||| ||||.||
RBAM_012380__ 331 TGGTTCGGCATTTATGACGTATTGAATGAAAAAACGGCCG---CGGCAAT 377
BSNT_02087___ 396 ATGGAAACGGACAAATGAACTGCTCAAAGGGGAAGGCTTCGGGGCAAGGG 445
.||||||...||.|||||.||.||..|.||.||.||.||.||.|||||||
RBAM_012380__ 378 TTGGAAAAAAACGAATGAGCTCCTGCAGGGAGACGGGTTTGGCGCAAGGG 427
BSNT_02087___ 446 ATTTAATCGTGAAATCAAATGTAAAGGTCGTGTGTACAACAGATGACCCT 495
||.|.||..|||||||||||||.||.|||.|.||.|||||.||.||.|||
RBAM_012380__ 428 ATCTCATTCTGAAATCAAATGTCAAAGTCATTTGCACAACCGACGATCCT 477
BSNT_02087___ 496 GTTGATTCTCTTGA-ATACCATCTATTATTAAGAGAAGACAAAGACTTTC 544
|..|||.|.| ||| ||||||...|.|.||.| ||||.|..||.||||
RBAM_012380__ 478 GCCGATGCGC-TGACATACCACGAACTGTTGA---AAGAAAGTGATTTTC 523
BSNT_02087___ 545 CTG-TCAGCGTGCTGCCTGGATTTCGGCCGGATAAAGGACTTGAGATCAA 593
|.| ||| .||||||||.|||||||||||.||.||||||||.||.||||
RBAM_012380__ 524 CGGTTCA-AGTGCTGCCCGGATTTCGGCCTGACAAAGGACTGGACATCA- 571
BSNT_02087___ 594 TCGTGAA-----GGCTTTCCTGAGTGGG---------TGCAG-GCGCTT- 627
|.| ||.|||.|.||.|||| ||.|| ||||||
RBAM_012380__ 572 ----GCAGCCCGGGTTTTGCCGATTGGGTCCGTTCGCTGGAGAGCGCTTC 617
BSNT_02087___ 628 --GAAGATGCCGCCGCCATATCGATTACAACCTATGATGAGTTTTTAAAG 675
|| ||| ||.|.||..|| |.|||.|| .||.||||.|.
RBAM_012380__ 618 CGGA--ATG--GCTGTCAGCTC-----CTACCAAT----CGTATTTAGAT 654
BSNT_02087___ 676 GCGTTGGAAAAACGAGTGCGATTCTTCCACTCAGCCGGCGGCAGAGTTTC 725
|||||.|||...||.||.||.||.||.|||...|||||.||.|||||.||
RBAM_012380__ 655 GCGTTAGAATCCCGCGTCCGCTTTTTTCACAATGCCGGGGGAAGAGTGTC 704
BSNT_02087___ 726 TGATCACGCGATAGATTCAATGGTATTTGCCGAAACAACAAAAGAAGAAG 775
.|||||.|||.|||||..||||||.|.||||||.||.||..||||.||||
RBAM_012380__ 705 GGATCATGCGTTAGATCAAATGGTTTATGCCGAGACGACCGAAGAGGAAG 754
BSNT_02087___ 776 CTGGACGGATTTTTTCTGACAGATTACAAGGAACAGAG---GTTTCTGAG 822
|.|..|||||||||.|.|...|||||...|| |||| ||.|||...
RBAM_012380__ 755 CGGCCCGGATTTTTGCCGCTGGATTAAGCGG---AGAGCATGTATCTTTT 801
BSNT_02087___ 823 GAAGCTGAGAAGAAATTTAAGACATATACGCTTCAGTTTCTTTGCGGTTT 872
||||.|||.||||||||.||.|||...|||||.||.|.||||||||||.|
RBAM_012380__ 802 GAAGATGAAAAGAAATTCAAAACACGGACGCTGCAATATCTTTGCGGTCT 851
BSNT_02087___ 873 GTATGCGGAGCTCGATTGGGCGATGCAGTTTCATATCAACGCTTTAAGAA 922
.||.||.||.||.||.||||||||||||||.|||||.|||||.|||||||
RBAM_012380__ 852 TTACGCCGAACTGGACTGGGCGATGCAGTTCCATATTAACGCGTTAAGAA 901
BSNT_02087___ 923 ACACGAATACAAAAATGATGAAAAGGCTCGGACCTGATACAGGCTATGAT 972
|.||.||||||||.|.|.|.|..||.||.||.||||||||.||.|||||.
RBAM_012380__ 902 ATACCAATACAAATAAGTTCAGCAGCCTTGGTCCTGATACGGGATATGAC 951
BSNT_02087___ 973 TCTATGAACGATGAAGAAATTGCTAAGCCTTTATACAAGCTT------CT 1016
||.||.||.||||||...||.||.||||| |||| ||
RBAM_012380__ 952 TCAATTAATGATGAACGTATCGCAAAGCC---------GCTTGCCCGGCT 992
BSNT_02087___ 1017 GAACTCAGTTGAGAT------GAAGAACCAGC------TGCCGAAAACGA 1054
| |.|||| ||| ||..||| ||||.|||||||
RBAM_012380__ 993 G--------TTAGATTCCGCCGAA-AAAAAGCGGCAATTGCCTAAAACGA 1033
BSNT_02087___ 1055 TTTTATATTCACTGAATCCAAACGATAACTATGTCATCGCCAGCATGATC 1104
||||.|||||..|||||||.||.||.||||||.|.|||||||||||||||
RBAM_012380__ 1034 TTTTGTATTCTTTGAATCCGAATGACAACTATATTATCGCCAGCATGATC 1083
BSNT_02087___ 1105 AACAGTTTTCAGGACGGTATTACCCCGGGAAAAATACAATTCGGCACAGC 1154
|||||.||||||||.||.|..||.|||||.|||||.||||||||||||||
RBAM_012380__ 1084 AACAGCTTTCAGGATGGGAAAACACCGGGGAAAATTCAATTCGGCACAGC 1133
BSNT_02087___ 1155 CTGGTGGTTTAACGATACTAAAGACGGAATGCTCGACCAAATGAAAGCGT 1204
|||||||||.||.||.||.|||||.|||||||||.|.|||||||.|||||
RBAM_012380__ 1134 CTGGTGGTTCAATGACACGAAAGATGGAATGCTCCAGCAAATGAGAGCGT 1183
BSNT_02087___ 1205 TATCAAATGTTGGCCTTTTCAGCCGTTTTATCGGCATGCTCACCGATTCC 1254
|||||||..|.|||||.|||||||||||||||||.|||||.||.|||||.
RBAM_012380__ 1184 TATCAAACATGGGCCTGTTCAGCCGTTTTATCGGGATGCTGACGGATTCA 1233
BSNT_02087___ 1255 AGAAGCTTTCTTTCGTATACGCGCCACGAATATTTCAGGCGGATCGTCTG 1304
|||||.||.||.||.|||.|.|||||.|||||.|||||||||.|.|||||
RBAM_012380__ 1234 AGAAGTTTCCTGTCCTATCCCCGCCATGAATACTTCAGGCGGCTTGTCTG 1283
BSNT_02087___ 1305 CAATTTGATTGGAGAATGGGTGGAAAACGGCGAAGTGCCGCGCGATATGG 1354
||...||||.||.|..||||.||||.|.|||||||.|||...||||||||
RBAM_012380__ 1284 CACGCTGATCGGCGGCTGGGCGGAACAAGGCGAAGCGCCTTACGATATGG 1333
BSNT_02087___ 1355 AGCTTCTGGGAAGCATCGTTCAGGGGATTTGCTATGACAATGC----GAA 1400
|||||.|.||||..||.||..||||||||||.||....||||| |||
RBAM_012380__ 1334 AGCTTTTAGGAAAGATTGTCGAGGGGATTTGTTACCGGAATGCTGAGGAA 1383
BSNT_02087___ 1401 ACACTACTTTCAATTTCAAGAAGAGAAAGCAAACGTGTAA 1440
||.||.|..|||.||
RBAM_012380__ 1384 ----TATTTCCGCTTTTAA--------------------- 1398
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