Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02084 and RBAM_012360

See Amino acid alignment / Visit BSNT_02084 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02084___yjlC.1.9828.seq
#    -bsequence dna-align/RBAM_012360___yjlC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02084___yjlC-RBAM_012360___yjlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02084___yjlC-RBAM_012360___yjlC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02084___yjlC
# 2: RBAM_012360___yjlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity:     377/423 (89.1%)
# Similarity:   377/423 (89.1%)
# Gaps:           6/423 ( 1.4%)
# Score: 1712.5
# 
#
#=======================================

BSNT_02084___      1 ATGCCAGAAACAATCGATCAAACAAATGCGTCTGTCAGCCAAAGCCAGCA     50
                     |||||||||||||||||||||||||||||.||||||||||||.||||.|.
RBAM_012360__      1 ATGCCAGAAACAATCGATCAAACAAATGCATCTGTCAGCCAAGGCCAACG     50

BSNT_02084___     51 AGATCTTATTGATCAGCTATTAAAGCCAGAAGTTCAAGAATCATTGACTG    100
                     .|||||||||||||||||..||||.||.|||||||||||||||.||||||
RBAM_012360__     51 CGATCTTATTGATCAGCTGCTAAAACCTGAAGTTCAAGAATCACTGACTG    100

BSNT_02084___    101 TTTTAGTTGACCAGCTTCCGAAGCTGACTGAGTTAGTGAATATTTTAACG    150
                     |||||||.||.||||||||.||.||||||||||||||.||||||||||||
RBAM_012360__    101 TTTTAGTGGATCAGCTTCCAAAACTGACTGAGTTAGTAAATATTTTAACG    150

BSNT_02084___    151 AAGTCTTATGATTTCGCTCAGTCTGTAGCGACTGACGAAGTGTTAAAGAG    200
                     ||||||||||||||.||.||||||||||||||.||||||||.||.|||||
RBAM_012360__    151 AAGTCTTATGATTTTGCACAGTCTGTAGCGACAGACGAAGTATTGAAGAG    200

BSNT_02084___    201 CGACACAGTCGGTGCGATCACTGAAATTCTCGAGCCTGTAAAAGAAACAG    250
                     |||.|||||.||||||.|.||.||||||||.|||||.||.||||||||||
RBAM_012360__    201 CGATACAGTGGGTGCGCTTACAGAAATTCTTGAGCCGGTGAAAGAAACAG    250

BSNT_02084___    251 CGAAAGAAGTAGCTGCGACTGCGATCGAAGCAAAAGACCGCGCGGAAGCA    300
                     ||||||||||.||.||.|||||||||||||||||||||||||||||.|||
RBAM_012360__    251 CGAAAGAAGTGGCGGCTACTGCGATCGAAGCAAAAGACCGCGCGGATGCA    300

BSNT_02084___    301 AGCAACGAAACAATTGGACTTTTCGGCCTTCTTCGCATGCTGAAAGATCC    350
                     |||||.|||||.||.||||||||||||||.||.|||||||||||||||||
RBAM_012360__    301 AGCAATGAAACGATCGGACTTTTCGGCCTGCTGCGCATGCTGAAAGATCC    350

BSNT_02084___    351 TCAAGCTCAAAAGCTGTTCCGTTTTGCTAACAGCTACCTTGAAGTCATGA    400
                     ||||||||||||||||||||||||||||||||||||.||||||.||||||
RBAM_012360__    351 TCAAGCTCAAAAGCTGTTCCGTTTTGCTAACAGCTATCTTGAAATCATGA    400

BSNT_02084___    401 ACGAACGCGAAAACCAAAAATAA    423
                     |      ||||||.|||||||||
RBAM_012360__    401 A------CGAAAAACAAAAATAA    417


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