Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02079 and RBAM_012340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02079___yjlA.1.9828.seq
# -bsequence dna-align/RBAM_012340___yjlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02079___yjlA-RBAM_012340___yjlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02079___yjlA-RBAM_012340___yjlA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02079___yjlA
# 2: RBAM_012340___yjlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1009
# Identity: 743/1009 (73.6%)
# Similarity: 743/1009 (73.6%)
# Gaps: 59/1009 ( 5.8%)
# Score: 2658.5
#
#
#=======================================
BSNT_02079___ 1 ATGAAAGCTATCGTTATCGGAATATTGGCTTCACTTTTTTTCGCCGTTAC 50
||||||||.|||||.||||||||||||||.||.||.|||||.||.||.||
RBAM_012340__ 1 ATGAAAGCCATCGTGATCGGAATATTGGCATCTCTGTTTTTTGCAGTCAC 50
BSNT_02079___ 51 CTTTATATTAAACAGAGCGATGGAGTTATCAGGAGGCAGCTGGCTTTGGA 100
.|||||.||||||||.|||||||||.|.||.||.||.||||||.|.||||
RBAM_012340__ 51 ATTTATTTTAAACAGGGCGATGGAGCTTTCCGGCGGAAGCTGGATGTGGA 100
BSNT_02079___ 101 GCTCTTCGCTGCGCTTTATTTTTATGGTGCCGTTTTTATGTTTGATTGTC 150
|||||||.|||||.|||.||||||||||.||||||||||.||||||.||
RBAM_012340__ 101 GCTCTTCCCTGCGTTTTCTTTTTATGGTTCCGTTTTTATTTTTGATCGT- 149
BSNT_02079___ 151 ATCA--TGAGAGGGACATTCACGCCTCTCTTACTAGAGATGAGGAAAAAG 198
|.| |||.|||.|.||....|||.||||..|..||.||..|||||||.
RBAM_012340__ 150 -TTATGTGAAAGGAAAATGGGGGCCGCTCTGGCATGAAATCCGGAAAAAA 198
BSNT_02079___ 199 CCGTTTTATTGGATCAAATGGAGCTTCGTCGGCTTCGTGCTTTTTTACGC 248
|||||||.||||.|.||.|||||.||...|||.||||||||||||||.||
RBAM_012340__ 199 CCGTTTTTTTGGCTGAAGTGGAGTTTTACCGGGTTCGTGCTTTTTTATGC 248
BSNT_02079___ 249 GCCGATTACATTTGCGGCTGCATACGGTCCGGGGTGGCTCATAGCCGGAA 298
.||||||||.||||||||.|||||.||.|||||.|||||.||.|||||.|
RBAM_012340__ 249 CCCGATTACGTTTGCGGCGGCATATGGGCCGGGCTGGCTGATCGCCGGCA 298
BSNT_02079___ 299 CCTGGCAAATTACAATTGTAGCCGGGGTGCTCTTATCTCCTTTGTTTTAT 348
|.|||||.|||||||||||.||.||.|||||..|.||.||.||.||.||.
RBAM_012340__ 299 CGTGGCAGATTACAATTGTCGCGGGTGTGCTTCTGTCGCCGTTTTTCTAC 348
BSNT_02079___ 349 GTCAAACAAGATATGC-CGGGCGGTCCGCAGTTCGTTCGC----CAAAAG 393
| ||||||.|.||.| |.|||||.|| |.||| |.||| ||||||
RBAM_012340__ 349 G--AAACAAAAAATTCACCGGCGGGCC-CGGTT--TCCGCCAGACAAAAG 393
BSNT_02079___ 394 ATTCCCCTGGTTTCACTTGGCACTTCCATGATCATCCTGATTGGAGCGGC 443
||.||.|||.||||.||.|..||||||.|.|||||||||||.|||||.|.
RBAM_012340__ 394 ATCCCGCTGATTTCGCTGGTTACTTCCGTCATCATCCTGATCGGAGCCGG 443
BSNT_02079___ 444 TCTGATTCAGCTTCAGCATGCAGAATCGCTTTCTGGGAGGATGCTGCTTT 493
|||||||||||||||||||||.|..||.||.||.||..|.|.|.|.||.|
RBAM_012340__ 444 TCTGATTCAGCTTCAGCATGCGGGTTCTCTGTCCGGCCGCACGATACTAT 493
BSNT_02079___ 494 TCAGTGTGCTGCCGGTTGTCATTGCGGCTTTTGCCTATCCGTTAGGAAAC 543
||||.||..|||||||.|||||.||.|||||||||||||||.|.||.|||
RBAM_012340__ 494 TCAGCGTTGTGCCGGTCGTCATCGCCGCTTTTGCCTATCCGCTCGGCAAC 543
BSNT_02079___ 544 AGGAGAATGCTCGAAGAATACGGAGGCCGG----CTTGATACATTTCAGC 589
.|.|.||||||.|||.||||||| ||| ||.|||||||||||||
RBAM_012340__ 544 CGCAAAATGCTGGAACAATACGG----CGGAAAACTCGATACATTTCAGC 589
BSNT_02079___ 590 GCGTGCTTGGAATGACATTGGCAAGCCTTCCATTCTGGCTTATATTAGCA 639
|.|||||.||.|||||..|.|||||||||||.||.||||||.|..|.||.
RBAM_012340__ 590 GGGTGCTCGGCATGACGCTCGCAAGCCTTCCGTTTTGGCTTTTGATCGCC 639
BSNT_02079___ 640 GCTTACGGCTGG--TGGTCAGACGGCCTTCCAACAG-CAA---GCCAAAC 683
||||.||||||| |.| ||||||.||||| | ||| |.||.||
RBAM_012340__ 640 GCTTTCGGCTGGCATAG--AGACGGGCTTCC----GTCAATGGGACAGAC 683
BSNT_02079___ 684 CGTTCAATCCTTTATCGTAGCCGTCAGCTCAGGCATCATTGCGACGGTTT 733
..|.||||||||||||||.||..|||||||.|||.|.||.||.||.||.|
RBAM_012340__ 684 ATTCCAATCCTTTATCGTCGCACTCAGCTCTGGCGTTATCGCAACAGTAT 733
BSNT_02079___ 734 TATTTTTCTGGGCCACTGATATGGTAAGAGACAATCCGCAAAAACTCGCA 783
||||||||.|.|||||.||||||||.||..|..|.|||||.||.|||||.
RBAM_012340__ 734 TATTTTTCCGCGCCACCGATATGGTGAGGAATGAGCCGCAGAAGCTCGCT 783
BSNT_02079___ 784 GCCGTTGAAGCCACTCAATCCGGTGAAGTGATTTTCGCGTTGCTTGGTGA 833
||.||||||||.||.||.|||||.||.||..||||.||..||.|.||.||
RBAM_012340__ 784 GCTGTTGAAGCGACGCAGTCCGGAGAGGTTCTTTTTGCACTGATCGGCGA 833
BSNT_02079___ 834 AATTGT-------TCTGCTGTCAGGCGTTTTCCCATCTCTTTTATCATTT 876
|||.|| ||.|| ||||||| ||.||.|||.|.||||||
RBAM_012340__ 834 AATCGTCTTTTTATCCGC-----GGCGTTT--CCGTCACTTCTTTCATTT 876
BSNT_02079___ 877 GCCGGTTTGTTCATTATAATAGCGGGGATGATGTTACATACCTTCGCTTC 926
|||||..||||||||||.||.|||||.|||.|..|.|||||.||||||||
RBAM_012340__ 877 GCCGGACTGTTCATTATTATTGCGGGAATGGTCATGCATACATTCGCTTC 926
BSNT_02079___ 927 ACAGCCGAGAAAACCGAAAAAG--AAAGCACA-GTCA---AATCTGAC-- 968
.|.||.||.|.|.|.|||||.| ..||||.| |||| |||||.||
RBAM_012340__ 927 CCGGCAGACAGACCAGAAAACGGCTGAGCAAACGTCAGCCAATCTCACCG 976
BSNT_02079___ 969 --TGCTTAG 975
|.||.|
RBAM_012340__ 977 GTTCCTGA- 984
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