Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02071 and RBAM_012300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02071___yjiC.1.9828.seq
# -bsequence dna-align/RBAM_012300___yjiC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02071___yjiC-RBAM_012300___yjiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02071___yjiC-RBAM_012300___yjiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02071___yjiC
# 2: RBAM_012300___yjiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1284
# Identity: 810/1284 (63.1%)
# Similarity: 810/1284 (63.1%)
# Gaps: 201/1284 (15.7%)
# Score: 2424.5
#
#
#=======================================
BSNT_02071___ 1 ---ATGAAAAAGTACCATATTTCG--ATGATCAATATCCCGGCGTACGGA 45
||||.||| |.||.|..||| ||.||.|||.|..|.||..||||.
RBAM_012300__ 1 ATGATGAGAAA--AACACACATCGCCATTATTAATGTGGCCGCTCACGGT 48
BSNT_02071___ 46 CATGTCAATCCTACGCTTGCTTTAGTAGAGAAGCTTTGTGAGAAA----G 91
|||||||||||.|||||..||.|||..|||.|.| |||| .|| |
RBAM_012300__ 49 CATGTCAATCCCACGCTGCCTGTAGCCGAGGAAC-TTGT---CAATCGCG 94
BSNT_02071___ 92 GGCACCGTGTCACGTACGCGACGACTGAGGAGTT---TGCGCCCGCTGTT 138
||.|....||.||.|.|||.|||||||||||.|| .||..|||.||
RBAM_012300__ 95 GGTATAAAGTGACATTCGCTACGACTGAGGAATTCGAAGCTTCCGTTG-- 142
BSNT_02071___ 139 CAGCAAGCCGGTGGAGAAGCATTGCTCTATCATACATCC--TTGAATATT 186
.|||..||| ||.|.|| ||| ||..|||..
RBAM_012300__ 143 --CCAAAACGG------------GCGCCAT------TCCCGTTTTATACC 172
BSNT_02071___ 187 GATCCTAAGCA-AATCAG--------GGAGATGATGGAAAAG-------- 219
| |..||||| || || |||||.||| |||||
RBAM_012300__ 173 G--CACAAGCATAA--AGGCGGACCCGGAGACGAT--AAAAGAACGGGTA 216
BSNT_02071___ 220 ------AATGACGCGCCCCTCAGCCTTT----------TGAAAGAATCAC 253
|||||.||| ||| ||.|||||.|..
RBAM_012300__ 217 AATAAAAATGATGCG----------TTTGTGATGTTTCTGGAAGAAGCGG 256
BSNT_02071___ 254 T--CAGCATTCTGCCGCAGCTTGAGGAGTTATATAAGGATGATCAGCCTG 301
| .|| |.||.||||||||.||.|||.|.||.||.||.||.|..||||
RBAM_012300__ 257 TTGAAG--TGCTTCCGCAGCTGGAAGAGCTGTACAAAGACGACCTTCCTG 304
BSNT_02071___ 302 ATCTGATCATCTATGACTTTGTTGCGCTGGCTGGTAAATTGTTTGCTGAA 351
|..|..||.|.|.|||.|||.|.||.||.||.||.|||||||||||.||
RBAM_012300__ 305 ACATCGTCCTGTTTGATTTTTTAGCTCTTGCCGGAAAATTGTTTGCGGA- 353
BSNT_02071___ 352 AAGCTTAATG------TTCCGGTCATTAAGCTCTGTTCGTCATATGCCCA 395
||||| |.||||.|.|.|||.||||..||...|||| ||
RBAM_012300__ 354 -----TAATGGCGGCATCCCGGCCGTAAAGTTCTGCCCGAGCTATG--CA 396
BSNT_02071___ 396 A--AATGAATCCTTTCAGTTAGGAA---ATGAAGACATGCTGAAAAAAAT 440
| |||||.|..|||||.||||||| |.|||||.|..|||
RBAM_012300__ 397 ATGAATGAGTATTTTCAATTAGGAAGAGACGAAGAAACACTG-------- 438
BSNT_02071___ 441 AAGAGAAGC------AGAGGCTGAATTTA-AAGCCTACTTGGAGCAAGA- 482
||||| |.|||| || || |||..|||..||||| |||
RBAM_012300__ 439 ----GAAGCGGCCAAACAGGC-GA---TAGAAGAATACCAGGAGC-AGAT 479
BSNT_02071___ 483 -GAAGTTG----------CCGGCTGTTTCATTTGAACAGTTAGCTGTGCC 521
|||..|| .|||.|| .||.|.|||.|.||...|.||||
RBAM_012300__ 480 TGAAAATGAACAATTGAAACGGATG--ACAATGGAAGAATTTTTTATGCC 527
BSNT_02071___ 522 GGAAGCATTAAATATTGTCTTTATGCCGAAGTCTTTTCAGATTCAGCATG 571
.|||..|.|.|||||||||||||||||.|.|.|.||||||....|.||.|
RBAM_012300__ 528 TGAAAAACTGAATATTGTCTTTATGCCAAGGGCCTTTCAGCCGAAACAGG 577
BSNT_02071___ 572 AGACGTTCGATGACCGTTTCTGTTTTGTCGGCCCCTCTCTCGGAGAACGG 621
|.||.||.|||||.||.||||||||||..||.||.|||||.|||||||
RBAM_012300__ 578 AAACCTTTGATGAACGATTCTGTTTTGCGGGTCCGTCTCTTGGAGAAC-- 625
BSNT_02071___ 622 AAGGAGAAA----GAAAGCCTGTTGATTGA--CAAG--GATGATCGCCCG 663
|.|.||| |.|||.|||...||||| | || |||||.||.|||
RBAM_012300__ 626 --GCACAAATACGGGAAGTCTGGAAATTGATGC-AGCCGATGACCGTCCG 672
BSNT_02071___ 664 CTTATGCTGATTTCTTTGGGTACGGCGTTTAACACATGGCCGGAATTTTA 713
||||||||.||.||..||||.||||||||||||.|.|||||.||||||||
RBAM_012300__ 673 CTTATGCTCATCTCACTGGGAACGGCGTTTAACGCCTGGCCTGAATTTTA 722
BSNT_02071___ 714 CAAGATGTGCATCAAGGCATTTCGGGATTCTTCATGGCAAGTAATCATGT 763
|.|||||||.||..|.||.||||||||.||....||||..||.||.||||
RBAM_012300__ 723 CCAGATGTGTATTGACGCGTTTCGGGACTCGGACTGGCGGGTTATTATGT 772
BSNT_02071___ 764 CGGTTGGGAAAACGATTGATCCAGAAAGCTTGGAGGATATTCCTGCTAAC 813
|.||.||.|.|||.||||||||.|||||.||...||||.|.||.|.|.||
RBAM_012300__ 773 CAGTCGGCACAACAATTGATCCGGAAAGTTTTTCGGATGTCCCCGATCAC 822
BSNT_02071___ 814 TTTACCATTCGCCAAAGTGTGCCTCAGCTTGAGGTGTTAGAGAAAGCTGA 863
||||.|||.|||||....||.|||||||||||.|||.|.||||||||..|
RBAM_012300__ 823 TTTATCATCCGCCAGCACGTTCCTCAGCTTGATGTGCTGGAGAAAGCAAA 872
BSNT_02071___ 864 TTTGTTCATCTCTCATGGCGGGATGAACAGTACGATGGAAGCGATGAACG 913
..|||||.|.|||||.|||||||||||||||||.|||||.||||||||.|
RBAM_012300__ 873 GCTGTTCGTATCTCACGGCGGGATGAACAGTACAATGGAGGCGATGAATG 922
BSNT_02071___ 914 CAGGTGTGCCGCTTGTCGTCATTCCGCAAATGTATGAGCAAGAGCTCACT 963
|.|||||.|||||.||.|||.|||||||||||.|.||.||||||.|.||.
RBAM_012300__ 923 CGGGTGTCCCGCTCGTTGTCGTTCCGCAAATGCACGAACAAGAGGTTACC 972
BSNT_02071___ 964 GCAAATCGGGTTGATGAATTAGGCCTTGGCGTTTATTT---GCCGAAAGA 1010
|||||.||.||.||||||||.||.||||||||..||.| |||||||
RBAM_012300__ 973 GCAAAGCGTGTGGATGAATTGGGGCTTGGCGTGCATCTGCCGCCGAAA-- 1020
BSNT_02071___ 1011 GGAAGTGACTGTTTCCAGCCTGCAGGAAGCGGTTCAGGCTGTATCCAGTG 1060
|||||.|||||..||.|..||||..|||..||||||...||||.|.|.|
RBAM_012300__ 1021 -GAAGTCACTGTGGCCCGTTTGCAAAAAGATGTTCAGAACGTATACGGCG 1069
BSNT_02071___ 1061 ATCAAGAGCTGCTCAGCCGCGTCAAGAATATGCAAAAGGATGTAAAAGAA 1110
||.||.|..|.|||||||||||.||.|..|||||..||.|..||.|||||
RBAM_012300__ 1070 ATAAAAACATCCTCAGCCGCGTGAAAAGCATGCAGCAGAAAATAGAAGAA 1119
BSNT_02071___ 1111 GCTGGCGG-----AGCGGAGC-----GTGCGGCAGCTGAGATTGAAGCGT 1150
.|.||||| |.|.| || |||| .|||||||..|
RBAM_012300__ 1120 ACCGGCGGCCCCAAACAG-GCTGTTTGTGC---------CATTGAAGAAT 1159
BSNT_02071___ 1151 TTATGAAAAAATCCGCTGTCCCGCAGTAA----- 1179
||.|||||||..|.||.||| |.||
RBAM_012300__ 1160 TTTTGAAAAAGGCGGCCGTC-----GAAAATTGA 1188
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