Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02065 and RBAM_012280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02065___yjgD.1.9828.seq
# -bsequence dna-align/RBAM_012280___yjgD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02065___yjgD-RBAM_012280___yjgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02065___yjgD-RBAM_012280___yjgD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02065___yjgD
# 2: RBAM_012280___yjgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 590
# Identity: 385/590 (65.3%)
# Similarity: 385/590 (65.3%)
# Gaps: 76/590 (12.9%)
# Score: 1252.5
#
#
#=======================================
BSNT_02065___ 1 ATGGCTAAAGCGATTAAACGAATCCAAAAAATCGAG---GTAACAGAAGA 47
|||||||||||.||.|...|.||||.|||| .|| ||.||||||||
RBAM_012280__ 1 ATGGCTAAAGCAATCAGCGGCATCCGAAAA---CAGACCGTCACAGAAGA 47
BSNT_02065___ 48 GGATCAGCGAAAGCGTGATTTGCGGGAAA-----TTGAAGA--------- 83
.||..|.||||| ||| |.|||||
RBAM_012280__ 48 AGACAAACGAAA--------------AAAGGACTTAGAAGAGATCGAGAC 83
BSNT_02065___ 84 TGCTCTAGTT---GATCACAAAGAAGCGATTCTCGAAACCTTGCATATGC 130
.||||| || || .|.|||||.||||||.|.|||.|..||||.||.|
RBAM_012280__ 84 GGCTCT--TTTACGA-AATAAAGACGCGATTTTGGAATCTCTGCACATTC 130
BSNT_02065___ 131 TGGGCCATATGAACGAGCGCGGTGTCCTGCCGTTGCTCCGCGGCCTTTTT 180
|....||.||||||||||||||.||..||.||.|.||.|||||.||.||.
RBAM_012280__ 131 TTCAGCACATGAACGAGCGCGGCGTTTTGGCGCTTCTGCGCGGGCTCTTC 180
BSNT_02065___ 181 GGTCAAGGGGATAAAGTTCTTGATATCCTGGTGAAAAAGGCAGATACAGA 230
||.||.||.||.|||||..|.||||||||.|||||.|||||..||||...
RBAM_012280__ 181 GGCCAGGGAGACAAAGTGATGGATATCCTCGTGAAGAAGGCGAATACTCC 230
BSNT_02065___ 231 GGAAACAGCCAATACGCTGAAAAATCTGCTTCTTCT-------GTTTGGA 273
||||||.|||||||.||||||||||||.||.||..| |||
RBAM_012280__ 231 GGAAACGGCCAATATGCTGAAAAATCTCCTGCTGTTAAGCGGCGTT---- 276
BSNT_02065___ 274 ACACTCGGCATGCTGGACGTGAAGCAGCTGGAGCCTCTCATTTTGAAAGT 323
|||||||||||.||.||.||.|||||.|||||..|.||..|.|||.|
RBAM_012280__ 277 ---CTCGGCATGCTCGATGTAAAACAGCTTGAGCCGTTTATCGTTAAAAT 323
BSNT_02065___ 324 GAATGCGGGTGTGGCAAGCGCTGTAGAGCAGAAAAACAGTGAAGAA--AA 371
.||||||||.||..|||..||.||.|||.|.|||.||||.| |.| ||
RBAM_012280__ 324 CAATGCGGGGGTCACAAAGGCCGTCGAGGAAAAAGACAGCG--GCAGGAA 371
BSNT_02065___ 372 GACAGGTTATTTTGATATTATCCGCTCGCTAAAAGACCCGGAAATCAACA 421
|||.||.|||||||||||..|||||.|..|||||||||||||||||||||
RBAM_012280__ 372 GACCGGGTATTTTGATATCGTCCGCGCTTTAAAAGACCCGGAAATCAACA 421
BSNT_02065___ 422 AATCAATTACACTGCTCTTTTCCTTTTTAAAAGGAATGGGACAAGATACA 471
|..|..|.||.|||||.|||||.||..|.|||||.|||||....|||||.
RBAM_012280__ 422 AGGCCGTCACTCTGCTGTTTTCTTTCCTGAAAGGCATGGGCGCTGATACG 471
BSNT_02065___ 472 AAGGAGCTGGAACGCACGACGCAGCCTCCGGAACACCAAAAATATCATCA 521
.|.||..|||||.|.|..|||||||||||.|||.|||||||..|.||.||
RBAM_012280__ 472 GACGATATGGAAAGAAATACGCAGCCTCCTGAAGACCAAAAGCAGCACCA 521
BSNT_02065___ 522 GGAACCCCGAGAGAAAAGGGGAATGAATAAGCGAGATTGA 561
|.||||.| ||..||||||.|.|
RBAM_012280__ 522 GAAACCGC--------AGACGAATGAGTGA---------- 543
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