Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02062 and RBAM_012270

See Amino acid alignment / Visit BSNT_02062 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence dna-align/BSNT_02062.1.9828.seq
#    -bsequence dna-align/RBAM_012270___yjgC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02062-RBAM_012270___yjgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02062-RBAM_012270___yjgC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02062
# 2: RBAM_012270___yjgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2995
# Identity:    1175/2995 (39.2%)
# Similarity:  1175/2995 (39.2%)
# Gaps:        1526/2995 (51.0%)
# Score: 4638.0
# 
#
#=======================================

BSNT_02062         1 ---------------------------------ATGCCTGGCAAGAAAAA     17
                                                      |||.||||.|..||.||
RBAM_012270__      1 ATGTATAGAGGGGTACAGAAAGGGGAAAAGAAAATGGCTGGTACAAAGAA     50

BSNT_02062        18 AATCACAATAAACGGCGTTGAAATGGAAGCGTCCGAGGAACAGACGGTGC     67
                     |.|.|||||.||.||.|||||||||||||||.|.||.|..||.||.||..
RBAM_012270__     51 AGTTACAATCAATGGGGTTGAAATGGAAGCGCCGGACGGCCAAACCGTTT    100

BSNT_02062        68 TGCAGCTTTTGAATAACAGCTCGATTGAAGTGCCGCAAGTTTGCTATCAT    117
                     |||||||||||||.||.||.||.|||||.||||||||.||.||.||||||
RBAM_012270__    101 TGCAGCTTTTGAACAATAGTTCAATTGACGTGCCGCACGTGTGTTATCAT    150

BSNT_02062       118 CCAAGCTTAGGGCCGATTGAGACATGTGATACGTGCATCGTCAGCATCAA    167
                     ||.||..|.|||||||||||.||.||.|||||.||.|||||||...|.||
RBAM_012270__    151 CCGAGTCTCGGGCCGATTGAAACGTGCGATACCTGTATCGTCAATGTTAA    200

BSNT_02062       168 TGGTGAGCTGAAGAGGTCGTGCTCCGCTGAATTAAAGGATGGGGATGTCA    217
                     .||.||.|||..|.|.|||||.|||||..||.|||||||.||.|||||||
RBAM_012270__    201 CGGGGAACTGGTGCGTTCGTGTTCCGCGCAAATAAAGGACGGAGATGTCA    250

BSNT_02062       218 TTGATACGCTCTCACCTGACGTGAAAAAAGCGCAGGTCATCGGGATGGAC    267
                     |.||||||||.||..|.||.|||||||||||||||.|.|||||.||||||
RBAM_012270__    251 TCGATACGCTTTCGTCCGATGTGAAAAAAGCGCAGATTATCGGCATGGAC    300

BSNT_02062       268 AAGATTTTATATAATCATGAGCTTTATTGTACAGTTTGCGATTACAACAA    317
                     ||.|||||..|.||.|||||..|.||.||.||.||.||.|||||||||||
RBAM_012270__    301 AACATTTTGCACAACCATGAATTGTACTGCACGGTCTGTGATTACAACAA    350

BSNT_02062       318 TGGGGGATGCGAAATACATAATACGGTGAAGGAAATGAAAATCAATCACC    367
                     ||||.|.||||||.||||||||||.||.||||||||||||||||||||.|
RBAM_012270__    351 TGGGAGCTGCGAAGTACATAATACCGTAAAGGAAATGAAAATCAATCATC    400

BSNT_02062       368 AAAGCATTCCGTTTGATCACAAGCCATACCATAAGGATGAATCCCATCCG    417
                     |||||||||||||.|||||.||.||.||.|.|||.||||||||..|||||
RBAM_012270__    401 AAAGCATTCCGTTCGATCAAAAACCGTATCCTAAAGATGAATCAAATCCG    450

BSNT_02062       418 TTTTATCGGTATGATCCAGATCAATGTATATTGTGCGGACGCTGTGTTGA    467
                     |||||.||.||||||||.||.||.||.||.||||||||||||||.||.||
RBAM_012270__    451 TTTTACCGATATGATCCCGACCAGTGCATTTTGTGCGGACGCTGCGTCGA    500

BSNT_02062       468 AGCATGCCAGGACGTTCAGGTAACTGAAACGCTGACCATTGACTGGGAGC    517
                     |||.||.||||||||.||||||||.||||||.|.|.||||||.|||||||
RBAM_012270__    501 AGCCTGTCAGGACGTACAGGTAACCGAAACGTTAAGCATTGATTGGGAGC    550

BSNT_02062       518 GGAAACGCCCGCGCGTCATTTGGGATAACGACGTGCCGATCAATGAGTCG    567
                     |||||||||||||.||||||||||||.|.||.||||||||||||||.||.
RBAM_012270__    551 GGAAACGCCCGCGGGTCATTTGGGATCAGGATGTGCCGATCAATGAATCA    600

BSNT_02062       568 TCATGTGTGTCATGCGGTCATTGTTCAACGGTCTGTCCGTGCAACGCGAT    617
                     ||||||||.||.|||||.||||||||.|||||.|||||||||||.||.||
RBAM_012270__    601 TCATGTGTTTCCTGCGGACATTGTTCGACGGTATGTCCGTGCAATGCCAT    650

BSNT_02062       618 GATGGAAAAAGGAATGGAAGGGGAAGCCGGATATTTAACAGGCATCAATA    667
                     ||||||||||||.||||||||.|||||.||.||||||||||||||.||..
RBAM_012270__    651 GATGGAAAAAGGCATGGAAGGCGAAGCGGGGTATTTAACAGGCATTAACC    700

BSNT_02062       668 ACGAAACGCTGCGACCGATGATCGAGATCACGAAAGGCGTAGAGACAGGC    717
                     |.||.|||||.||.||||||||.||.|||||.||.|||||.||.||.||.
RBAM_012270__    701 AAGAGACGCTTCGGCCGATGATTGACATCACAAAGGGCGTCGAAACCGGA    750

BSNT_02062       718 TACGGCTCGATTCTCGCCATTTCTGATATGGAATCGGCCATGCGTGATGA    767
                     |||||.||||||.|.|||||.||.||.|||||||||||||||||.|||||
RBAM_012270__    751 TACGGATCGATTTTGGCCATATCGGACATGGAATCGGCCATGCGGGATGA    800

BSNT_02062       768 ACGAATCAAAAAAACGAAAACCGTCTGCACGTATTGCGGCGTCGGCTGCA    817
                     |.|||||||.||||||||||||||.|||||.||.||.||.||.|||||||
RBAM_012270__    801 AAGAATCAAGAAAACGAAAACCGTATGCACTTACTGTGGTGTAGGCTGCA    850

BSNT_02062       818 GCTTTGATGTCTGGACAAAGGGCAGAGACATTCTGAAAGTAGAGCCGCAG    867
                     |.||||||.|.|||||.||.||.|||||||||.|.||.||.|||||.|||
RBAM_012270__    851 GTTTTGATATATGGACGAAAGGAAGAGACATTTTAAAGGTCGAGCCTCAG    900

BSNT_02062       868 GAGGAAGCGCCTGCCAACGGCATTTCTACTTGTGTAAAAGGCAAGTTCGG    917
                     |..||.|||||.||.||.||||||||.||.|||||.|||||.||.|||||
RBAM_012270__    901 GCCGAGGCGCCCGCAAATGGCATTTCGACGTGTGTGAAAGGGAAATTCGG    950

BSNT_02062       918 CTGGGATTTCGTCAACAGCGAAGAACGCCTGACAAAGCCGCTGATCCGGG    967
                     |||||||||||||||.||.|||.|.|||||.||.||.|||||.|||||||
RBAM_012270__    951 CTGGGATTTCGTCAATAGTGAAAAGCGCCTTACCAAACCGCTTATCCGGG   1000

BSNT_02062       968 AAGGCGAC-CATTTCCGTGAAGCAGAGTGGGAGGAGGCGTTATTGCTGAT   1016
                     ||||.||| |.||| ||.||.||.||.|||||.||.|||.|...||||||
RBAM_012270__   1001 AAGGAGACTCGTTT-CGGGAGGCGGAATGGGATGAAGCGCTGCAGCTGAT   1049

BSNT_02062      1017 CGCCAGCAAGTTCACTGAATTAAAAGAGGCGTTT-GGCCCGGATTCTCTC   1065
                     |||....||.||.||.||..||||||| .|.||| ||||||||..|.||.
RBAM_012270__   1050 CGCTGATAAATTTACCGATATAAAAGA-ACATTTCGGCCCGGACGCACTT   1098

BSNT_02062      1066 GCTTTTATTACATCTTCTAAATGTACAAATGAAGAATCCTATCTTATGCA   1115
                     ||.|||||.||||||||.|||||.||.|||||||||||.||..|.|||||
RBAM_012270__   1099 GCCTTTATCACATCTTCCAAATGCACGAATGAAGAATCATACGTGATGCA   1148

BSNT_02062      1116 AAAGCTGGCCAGAGGGGTCATTGGCACAAATAATGTGGACAACTGCTCCC   1165
                     .|||||.||.||||..|||||.||||||||||||||.|||||||||||.|
RBAM_012270__   1149 GAAGCTTGCAAGAGCCGTCATCGGCACAAATAATGTCGACAACTGCTCAC   1198

BSNT_02062      1166 GCTATTGCCAATCTCCTGCGACTGCCGGCCTGTTCCGGACAGTCGGCTAT   1215
                     ||||.|||||.|||||.||.||.|||||..|||||.|.||.|||||.||.
RBAM_012270__   1199 GCTACTGCCAGTCTCCCGCCACGGCCGGATTGTTCAGAACGGTCGGATAC   1248

BSNT_02062      1216 GGCGGTGATTCAGGATCAATTACAGATATCGCGCAAGCGGACCTTGTTTT   1265
                     ||||||||||||||.||.|||||||||||.|...||||.||.||.||..|
RBAM_012270__   1249 GGCGGTGATTCAGGGTCGATTACAGATATAGAAAAAGCTGAGCTCGTGCT   1298

BSNT_02062      1266 GATTATCGGTTCGAACACGTCTGAGTCGCATCCAGTCTTATCCACTCGCA   1315
                     ||||||||||||.||.|||||||||||.||.||.|||.|.|||||.||||
RBAM_012270__   1299 GATTATCGGTTCAAATACGTCTGAGTCTCACCCCGTCCTGTCCACACGCA   1348

BSNT_02062      1316 TTAAACGGGCTCATAAGCTAAGAGGGCAGAAAGTGATCGTCGCGGATATC   1365
                     |||||||..|||||||.||....||.|||||..|..|||||||.||..|.
RBAM_012270__   1349 TTAAACGTTCTCATAAACTGCACGGACAGAAGCTCGTCGTCGCTGACTTG   1398

BSNT_02062      1366 AGAAAACACGAAATGGCAGAACGCTCCGATTTATTTGTCCAGCCGCGTGC   1415
                     .|||||||.||||||||.||.|||||||||.|.|||.|||||||||||||
RBAM_012270__   1399 CGAAAACATGAAATGGCCGAGCGCTCCGATGTGTTTTTCCAGCCGCGTGC   1448

BSNT_02062      1416 CGGATCGGATATCGTCTGGCTGAATGC--GATCGCCAAATATTTAATAGA   1463
                     ||||||.|||||.||||||||||||||  .||||  ||||||.|..|.||
RBAM_012270__   1449 CGGATCAGATATTGTCTGGCTGAATGCCGTATCG--AAATATCTGCTTGA   1496

BSNT_02062      1464 AAACGGCTAG----------------------------------------   1473
                     ..|||..|.|                                        
RBAM_012270__   1497 TCACGATTTGGCGGATACTTCATTTCTGAAGGAGAGAGTGAACGGATTAG   1546

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1547 ATGAATTCGTGAAAAGCCTTGAACCTTATACAATGGAATATGCGGAAAAA   1596

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1597 CATACCGGTGTGGACAAGGATACCCTAATCAAAGTGGCCCGGATGATTCA   1646

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1647 TGAAGCCGGCAGCGTGTGCGCACTGTGGGCGATGGGGGTCACCCAGCATA   1696

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1697 TCGGAGGTAGTGATACGAGCACGGCCATTTCCAACATGCTTCTTGTGACC   1746

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1747 GGAAATTACGGCAAGCCCGGCGCAGGCTCATATCCGCTTCGGGGCCATAA   1796

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1797 TAACGTGCAGGGAGCCAGTGATTTCGGCAGTATGCCTGACAGCTTCCCCG   1846

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1847 GCTATGAAAAAGTAACGGATGAAAAAGCCCGCAAAAAGTATGAACAGGGC   1896

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1897 TGGGGAACAGACCTGCCGAAAGAAATCGGAATGACAAATCATGAAATGAT   1946

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1947 CGAAGGCATCCACTCAGGAAAACTGAAGTCCATGTACTTAAAAGGAGAAG   1996

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   1997 AAATGGGGCTTGTCGACTCCAATATTAACCATGTTCATGCCGCATTTGAA   2046

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2047 AAGCTTGATTTCTTCGTTGTGCAGGATATCTTTCTTTCGCGTACGGCCGA   2096

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2097 GTTCGCCGATGTCGTGCTTCCGGCAAGCCCGAGCCTTGAAAAAGAAGGGA   2146

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2147 CGTTTACGAATACGGAACGGAGGGTGCAGCGCCTTTACGAAGTGTTCGAA   2196

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2197 CCGCTGGGCGATTCAAAGCCTGATTGGCAGATCATTACGGACATCGCCAA   2246

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2247 CCGTCTGGGCGCTGATTGGCACTATGAACATCCGGCAGACATTATGGAAG   2296

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2297 AAGCGGCAATGCTTTCGCCGCTCTACGCAGGCGTCACTTACGAACGTCTC   2346

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2347 GAAGGCTACAATTCACTGCAATGGCCGGTTGCAGCGGACGGAACCGATTC   2396

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2397 ACCGCTTTTATTTACGGATAAGTTCCCGTTTTCAGACGGCAAAGCGATTC   2446

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2447 TATATCCCGTTCAGTGGACCGAGCCGAAAGAATTTGATGAAGAATATGAT   2496

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2497 ATCCATGTGAATAACGGGAGGCTGCTCGAGCATTTTCACGAAGGGAATCT   2546

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2547 GACTTACCGATCAAAAGGAATATCCGAAAAAACGCCGAGTGTGTTCCTTG   2596

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2597 AGGTCTCGCCCGAACTCGCCGAAGAAAGAGGGCTGGAAGACGGAACGCTT   2646

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2647 GTCCGTCTGACATCACCGTACGGAAATGTGAAAGTCAAATGCGTCATCAC   2696

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2697 AGACAGGGTAAAAGGCAAACAAGTCTATCTCCCGATGAACGATTCAAAAG   2746

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2747 ACGCTGCCATTAACCTTTTGACAAGCAGCTATGCGGATAAGGATACCGAT   2796

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2797 ACACCGGCTTATAAAGAAACATCAGCGAAGATGGAGATTTTGAAAAAAGA   2846

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2847 AGGCGTTAATCCGCTTCCGAAAATCAATTTCCGTTACGGAAACCCGCAGC   2896

BSNT_02062      1473 --------------------------------------------------   1473
                                                                       
RBAM_012270__   2897 CGCAGATCGGTGTCCGGGTTGATCGGAAATGGGCGCGTAAAGATTATGTA   2946

BSNT_02062      1473 ---------------------------------------------   1473
                                                                  
RBAM_012270__   2947 TTTCCGGGAGACGCCGTAAAAAGGGGGAAACAGCAAAATGGCTAA   2991


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