Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02061 and RBAM_012260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02061___yjgB.1.9828.seq
# -bsequence dna-align/RBAM_012260___yjgB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02061___yjgB-RBAM_012260___yjgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02061___yjgB-RBAM_012260___yjgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02061___yjgB
# 2: RBAM_012260___yjgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 629
# Identity: 381/629 (60.6%)
# Similarity: 381/629 (60.6%)
# Gaps: 112/629 (17.8%)
# Score: 1070.5
#
#
#=======================================
BSNT_02061___ 1 ------ATGAAAAAGACAATGTCTGCTATTACCGCGGCGG------CAGC 38
|.||||||.|||.| |||..||| |.||
RBAM_012260__ 1 ATGTTGAAGAAAAAAACACT------------CGCCACGGGATTATCGGC 38
BSNT_02061___ 39 AGTA------ACAAGCTGTTTTACCGGCTTTGGGGCTGCGTCCTTTT--- 79
|||| ||..|.|| ||..||.||.||.|...|.||||
RBAM_012260__ 39 AGTAATGCTCACGGGATG------CGCATTCGGCGCAGAAGCATTTTCGG 82
BSNT_02061___ 80 -----CAGCACCGGCAAAGGCCGCAGC----TCAAACAAACACGCTCTCA 120
|||| |||.| .|.|||||||| |||||.| |.
RBAM_012260__ 83 TTACACAGC-CCGTC-CATGCCGCAGCCGCTTCAAAAA----------CG 120
BSNT_02061___ 121 GAAAAC--ACGAAT---CAATCAGCCGCCGAGCTTGTCAAAAACCTCTAT 165
|||||| ||| | ||| ||.||.||.||.|.|||.||.
RBAM_012260__ 121 GAAAACCAACG--TGCACAA---------GAACTGGTGAACAGCCTTTAC 159
BSNT_02061___ 166 AACACCGCCTATAAAGGGGAAATGCCTCAGCAGGCGCAAGGCCTTACCAT 215
.|..|.||.|.|||||||||||||||.||..|.|.|..||||||.|..||
RBAM_012260__ 160 CAATCGGCGTTTAAAGGGGAAATGCCGCAAAATGTGAGAGGCCTGAAAAT 209
BSNT_02061___ 216 TAACAAAAGCACAAAAGGGGATGTCCACGCTGCGTTTGGGGAACCGGAA- 264
.|||.|||||||||.|..|||.||..|||.|....|.||.||.||||||
RBAM_012260__ 210 CAACCAAAGCACAAGACAGGACGTTTACGATAAAATCGGCGAGCCGGAAC 259
BSNT_02061___ 265 -------AGACCAGTCGGGGGAGACAATCGCTTTGATTTATATCA-CTGG 306
||| |||.|| |||||..||||||||||| || ||||
RBAM_012260__ 260 AAAAAGCAGA-CAGCCG-------CAATCCATTTGATTTATA-CAGCTGG 300
BSNT_02061___ 307 AATATGGGACAGCCGGGCTACGGATTTTCCTATCATAAAGACATGACAAT 356
||.||||||.|.||.||.||.||||||||||||||||||.||...|.|||
RBAM_012260__ 301 AACATGGGAAACCCCGGTTATGGATTTTCCTATCATAAAAACGGAAAAAT 350
BSNT_02061___ 357 TTCAGAAATCCGCTACTTTGGAACCGGTGTGGAACGGCAGC-TGAATTTA 405
.||.|||||.|||||.||.|||||.||.||.||.|||| || |.||..|.
RBAM_012260__ 351 CTCGGAAATACGCTATTTCGGAACAGGGGTCGAGCGGC-GCTTAAACCTC 399
BSNT_02061___ 406 GGCGGAGTTACGCCGGAAGTACTGCAG-AAGCAATTAGGACCAGC----- 449
|||.|.||.||.||.||.|| ||..|| ||.|||.|.|| ||||
RBAM_012260__ 400 GGCAGCGTCACACCTGACGT-CTTAAGCAAACAAATCGG--CAGCGCTGA 446
BSNT_02061___ 450 --AAATCGGGTGTTAACCGTCCCGTTTACCGATGAAATCGATTATGTATA 497
||||| .|.||.||.||....||.|..||||..|||||.||.||
RBAM_012260__ 447 CAAAATC-----CTGACAGTGCCAAAAACGGGCGAAACAGATTACGTCTA 491
BSNT_02061___ 498 TGATACAGGCCACTATGAACTCCATTTTGTAATAGGCACGGATCAGACAG 547
..||||.||.||.|||||.||||..||.||.||.||||..||.||.|.||
RBAM_012260__ 492 CCATACGGGGCAGTATGAGCTCCGCTTCGTCATCGGCAGTGACCAAAAAG 541
BSNT_02061___ 548 CCGACCATGTAAACCTAAAAGCAAAATAA 576
|.|||||.||.|||||||||||.|.||||
RBAM_012260__ 542 CAGACCACGTCAACCTAAAAGCCAGATAA 570
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