Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02032 and RBAM_012090

See Amino acid alignment / Visit BSNT_02032 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_02032.1.9828.seq
#    -bsequence dna-align/RBAM_012090___yjcS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02032-RBAM_012090___yjcS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02032-RBAM_012090___yjcS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02032
# 2: RBAM_012090___yjcS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     263/304 (86.5%)
# Similarity:   263/304 (86.5%)
# Gaps:          23/304 ( 7.6%)
# Score: 1223.0
# 
#
#=======================================

BSNT_02032         1 ---------------------ATGCATTACATAACGGCATGTTTAAAAAT     29
                                          ||||||||||||||||||||.||||||||
RBAM_012090__      1 ATGGGAAGAGGGGGATTTTCGATGCATTACATAACGGCATGCTTAAAAAT     50

BSNT_02032        30 CATCAGTGATAAAGACCTTAATGAGATAATGAAGGAATTCAAAAAACTTG     79
                     ||||||||||||||||||||||||.||||||||.||.|||||||||||||
RBAM_012090__     51 CATCAGTGATAAAGACCTTAATGAAATAATGAAAGAGTTCAAAAAACTTG    100

BSNT_02032        80 AGGAAGAAACGAACAAAGAAGAAGGTTGTATTACA-TTCCATGCTTATCC    128
                     |||||||||||||||||||||||||.|||||| || ||||||||||||||
RBAM_012090__    101 AGGAAGAAACGAACAAAGAAGAAGGCTGTATT-CAGTTCCATGCTTATCC    149

BSNT_02032       129 GCTTGAGCCATCAGAACGTAAAATAATGCTTTGGGAGATTTGGGAAAACG    178
                     |||.||.|||||||||||.|||||.|||||||||||||||||||||||||
RBAM_012090__    150 GCTCGAACCATCAGAACGCAAAATCATGCTTTGGGAGATTTGGGAAAACG    199

BSNT_02032       179 AAGAAGCTGTGAAAACCCATTTCAGGAAAAAACACACAATAGACGTTCAA    228
                     ||||||||||.|||..||||||.|.|||||||||.||||.||||||||||
RBAM_012090__    200 AAGAAGCTGTTAAAGTCCATTTTACGAAAAAACATACAAAAGACGTTCAA    249

BSNT_02032       229 AAACAAGAATTAACGGAAGTAGAATGGTTAATGGAAAGCAATGTGAATGA    278
                     |||||||||||||||||||||||||||||||||.||||||||||||||||
RBAM_012090__    250 AAACAAGAATTAACGGAAGTAGAATGGTTAATGAAAAGCAATGTGAATGA    299

BSNT_02032       279 TTAA    282
                     .|||
RBAM_012090__    300 GTAA    303


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.