Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01977 and RBAM_011900

See Amino acid alignment / Visit BSNT_01977 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_01977___yjcF.1.9828.seq
#    -bsequence dna-align/RBAM_011900___yjcF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01977___yjcF-RBAM_011900___yjcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01977___yjcF-RBAM_011900___yjcF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01977___yjcF
# 2: RBAM_011900___yjcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 435
# Identity:     312/435 (71.7%)
# Similarity:   312/435 (71.7%)
# Gaps:          15/435 ( 3.4%)
# Score: 1117.0
# 
#
#=======================================

BSNT_01977___      1 TTGAAAGCAGTTATCGCAAAAAATGAAGAACAACTGAAAGATGCATTCTA     50
                     |||.||.|..|.||||||||||.||||.||||.||.||.||.||.||.|.
RBAM_011900__      1 TTGGAATCCATCATCGCAAAAACTGAAAAACAGCTAAACGACGCTTTTTT     50

BSNT_01977___     51 TGTAAGAGAAGAAGTCTTTGTCAAAGAACAAAACGTGCCTGCTGAAGAAG    100
                     .||.|||.||||.||||||||.||||||||..||||.||.|..|||||||
RBAM_011900__     51 CGTCAGAAAAGAGGTCTTTGTTAAAGAACAGCACGTTCCGGAAGAAGAAG    100

BSNT_01977___    101 AAATTGACGAACTTGAAAATGAGTCAGAGCATATCGTCGTGTATGACGGT    150
                     |.|||||..||.|.|||.|...||||||||||||.|||.|.||||||||.
RBAM_011900__    101 AGATTGATCAATTCGAAGACACGTCAGAGCATATAGTCATATATGACGGC    150

BSNT_01977___    151 GAAAAGCCTGTCGGTGCCGGAAGATGGCGCATGAAGGACGGCTACGGCAA    200
                     |...||||.|||||.|||||.|||||||||.||||.|||||..|.||.||
RBAM_011900__    151 GGCCAGCCGGTCGGAGCCGGCAGATGGCGCTTGAAAGACGGGCATGGAAA    200

BSNT_01977___    201 GTTAGAGCGGATTTGCGTACTGAAAAGCCACCGCTCAGCCGGTGTCGGCG    250
                     .||||||||.||.|||||..||||||||||.||.||....||.|||||.|
RBAM_011900__    201 ATTAGAGCGCATCTGCGTGATGAAAAGCCATCGTTCTTTAGGCGTCGGAG    250

BSNT_01977___    251 GCATCATTATGAAAGCGCTCGAAAAAGCCGCGGCAGACGGAGGCGCTTCC    300
                     .||||||||||.|.|||||.||||||||.|||||||.|...|||||...|
RBAM_011900__    251 CCATCATTATGCAGGCGCTTGAAAAAGCTGCGGCAGCCAAGGGCGCCGAC    300

BSNT_01977___    301 GGTTTCATTTTAAACGCGCAAACACAGGCTGTGCCGTTTTACAAGAAACA    350
                     .|.||.||.|||.|.|||||.||.|||||.||.|||||||||.|.|||||
RBAM_011900__    301 AGCTTTATCTTACATGCGCAGACGCAGGCGGTTCCGTTTTACGAAAAACA    350

BSNT_01977___    351 CGGGTATCGCGTGCTTTCTGAAAAAGAATACCTCGATGCCGGCATTCCGC    400
                     .||.||.|||||....||.|...||||||..||||||||.|||||.||.|
RBAM_011900__    351 AGGATACCGCGTCACATCCGGTGAAGAATTTCTCGATGCGGGCATCCCCC    400

BSNT_01977___    401 ACTTACAAATGATGAAGGACTGA------------    423
                     |..|..|||||||.|||||   |            
RBAM_011900__    401 ATCTGGAAATGATAAAGGA---ACACAAACGATAA    432


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.