Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01976 and RBAM_011850

See Amino acid alignment / Visit BSNT_01976 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_01976.1.9828.seq
#    -bsequence dna-align/RBAM_011850.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01976-RBAM_011850.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01976-RBAM_011850.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01976
# 2: RBAM_011850
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:     169/286 (59.1%)
# Similarity:   169/286 (59.1%)
# Gaps:          62/286 (21.7%)
# Score: 451.5
# 
#
#=======================================

BSNT_01976         1 ATGATATATGCAGGTCAAATTCAGAACCAGCAATACGCTCAATATGCTAA     50
                     |||||.||||||||.|..|||||.||||||||.||..|||||||.||.||
RBAM_011850        1 ATGATTTATGCAGGACGGATTCAAAACCAGCAGTATTCTCAATACGCAAA     50

BSNT_01976        51 TAG---AACGATTGGACATAAGCAGGATTATGCCGGAA--CCGAAAAAAT     95
                     ..|   |.||   ||..|||||...|||||||||.|.|  .||||     
RBAM_011850       51 CCGGGCAGCG---GGTTATAAGTCTGATTATGCCAGCATTACGAA-----     92

BSNT_01976        96 CAGCTATGTC--CCGTT-----TCAGCGGGTATACAAAGAACTGGAAAAG    138
                      |||   |.|  ||.||     |.|..||||.||||.|||..||| |..|
RBAM_011850       93 -AGC---GGCCGCCCTTGCCAATGACAGGGTGTACAGAGAGGTGG-AGCG    137

BSNT_01976       139 CAG-CAGGAGAATCAAACGGCAGCTG----AAAGAAAAGTAAACGAGATG    183
                     |.| |||||.|   |.||.|||||.|    |||| ||||||.|.|||...
RBAM_011850      138 CCGCCAGGAAA---ACACCGCAGCCGCAGAAAAG-AAAGTACATGAGGAA    183

BSNT_01976       184 AAACGTAAGCGCTCTCTTT--------------ATAAGAGATTGCGAGAA    219
                     |||||||||||||||||||              ||.|     ||      
RBAM_011850      184 AAACGTAAGCGCTCTCTTTCCCGTCTGCCGCAAATCA-----TG------    222

BSNT_01976       220 AAAGGAATGGGCACATATATTAATCGATATGTATAA    255
                        ||||..|||...|..||.||||.|||.||.|.|
RBAM_011850      223 ---GGAAAAGGCCGGTTGATAAATCAATACGTGTGA    255


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