Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01969 and RBAM_011800
See
Amino acid alignment /
Visit
BSNT_01969 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_01969___yjcA.1.9828.seq
# -bsequence dna-align/RBAM_011800___yjcA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01969___yjcA-RBAM_011800___yjcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01969___yjcA-RBAM_011800___yjcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01969___yjcA
# 2: RBAM_011800___yjcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 392
# Identity: 266/392 (67.9%)
# Similarity: 266/392 (67.9%)
# Gaps: 52/392 (13.3%)
# Score: 931.5
#
#
#=======================================
BSNT_01969___ 1 ------------------GTGGTTATAAATGGGCTGACAATTGTTCTTCT 32
||||||||.|||.||||..||.||.||||..|
RBAM_011800__ 1 TTGAAAAGGAGTGAACAGGTGGTTATCAATTGGCTTTCATTTATTCTGTT 50
BSNT_01969___ 33 ATCGCTTGCGGTCTTTCGGCTCGCCCGCCTGCTGGTGTTTGACACGATTA 82
||||.||||.||.||.|||||.|||.|.||..|.||.||||||||.||||
RBAM_011800__ 51 ATCGTTTGCCGTTTTCCGGCTGGCCAGGCTTTTCGTATTTGACACCATTA 100
BSNT_01969___ 83 TGGCGCCGCTTCGCAGTCTGTTTCATGAAGAGAAGGAAGAAAAGGATGCG 132
|||||||||||||.||.||.|||||.||.||.||...|||||..|...|.
RBAM_011800__ 101 TGGCGCCGCTTCGGAGCCTTTTTCACGAGGAAAAAACAGAAACCGCACCC 150
BSNT_01969___ 133 GACGGGA--ACATTGAAACCTATATCGTGATTAAGGGAACCGGTGTCAGG 180
|||||.| ||| ||||||||.||.||.||.||.||||..||..|||||
RBAM_011800__ 151 GACGGCACGACA--GAAACCTACATTGTCATAAAAGGAAAAGGGATCAGG 198
BSNT_01969___ 181 GCGTTTATTGGTGAATTGCTGAGCTGCTATTGGTGCACAGGCGTGTGGTG 230
||.|||||.||||||.|.||.||||||||.|||||.||.|||||.|||||
RBAM_011800__ 199 GCATTTATCGGTGAACTTCTCAGCTGCTACTGGTGTACGGGCGTATGGTG 248
BSNT_01969___ 231 CGCCGGCTTTTTGATTTTATGCCAGGCGTTGAT-------CCCGCAAG-C 272
|||||.||||||.|| |||| |||..||| |||| || |
RBAM_011800__ 249 CGCCGCCTTTTTAAT----TGCC--GCGCAGATTGTGATACCCG--AGAC 290
BSNT_01969___ 273 GGCGCAGTGGCTGATTTTACTTTTGGCGATCGCCGGCCTTGCCGGCATCA 322
.|||||.||||||||||||||.||.||.||.||||||...|||||.||||
RBAM_011800__ 291 CGCGCAATGGCTGATTTTACTGTTAGCCATAGCCGGCGCAGCCGGGATCA 340
BSNT_01969___ 323 TAGAAAC-------GCTCGTATCAAAATGGCTGCAAGAATAA 357
|.|||.| .|||||.| .|||||.||||||
RBAM_011800__ 341 TTGAAGCTGCGGTTTCTCGTCT-------TCTGCAGGAATAA 375
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.