Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01966 and RBAM_011780

See Amino acid alignment / Visit BSNT_01966 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_01966.1.9828.seq
#    -bsequence dna-align/RBAM_011780___cotW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01966-RBAM_011780___cotW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01966-RBAM_011780___cotW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01966
# 2: RBAM_011780___cotW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity:     205/369 (55.6%)
# Similarity:   205/369 (55.6%)
# Gaps:         105/369 (28.5%)
# Score: 502.5
# 
#
#=======================================

BSNT_01966         1 ATGTCCGAAGAAAAAGATGCACTGCAAAAAAACAAAGAAGAACTAGAAGC     50
                     |||   |.|||.||.|         |||||..||||||||||||   .||
RBAM_011780__      1 ATG---GCAGATAACG---------AAAAATTCAAAGAAGAACT---CGC     35

BSNT_01966        51 AAAT---------ATCGACCCCCTAACGAAACTTCTTGTTTCAG--ATGT     89
                     ||||         .|.||.||.||....|||.|.||||  ||||  ||||
RBAM_011780__     36 AAATCTACCAGAAGTGGATCCGCTTTTAAAAGTGCTTG--TCAGCAATGT     83

BSNT_01966        90 ACTGAACAAAAACAATGTAACAGAAGATAAAAAACG-----CAACTTATC    134
                     ..|.||.|||.||...||.|||.|||||||||..||     .|.||.|| 
RBAM_011780__     84 CTTCAAAAAACACGGCGTGACAAAAGATAAAATGCGGGAAATACCTGAT-    132

BSNT_01966       135 AGAAGCTCAAAAACAAGCGATTATTACAATGGTAAATGACCTTCA----A    180
                      ||||   |||||.||..|.|.||..||.|.||.||.|||.|.||    |
RBAM_011780__    133 -GAAG---AAAAAGAAATGCTGATCGCATTAGTCAAAGACATGCAGGCGA    178

BSNT_01966       181 AAACAG--GCTAACGAATTTGTTGAAAG--AGTCAATAAGAAAAAGGCAG    226
                     ||.|||  |||      |||.|||||||  ||  ||..|||||||   ||
RBAM_011780__    179 AATCAGAAGCT------TTTCTTGAAAGCCAG--AAACAGAAAAA---AG    217

BSNT_01966       227 ATGCTGAAAAAGC---AGAACA--AG---AAGCAGC---GCCGCA---AA    262
                     | ||  |||||||   ||||||  ||   |||||||   .|||||   ||
RBAM_011780__    218 A-GC--AAAAAGCGCAAGAACAGCAGACAAAGCAGCAAACCCGCAGAGAA    264

BSNT_01966       263 AAAGACGTCGAACAACACTGAGAGATCGCGTACGTCAAAGA----AAAA-    307
                     .||....|||||||.|              |.||.||||||    |||| 
RBAM_011780__    265 CAATTAATCGAACAGC--------------TCCGGCAAAGACGCCAAAAT    300

BSNT_01966       308 -----ACGATAATATTTAA    321
                          .|.||||       
RBAM_011780__    301 CCCGGTCAATAA-------    312


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