Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01956 and RBAM_011720

See Amino acid alignment / Visit BSNT_01956 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_01956___yjbV.1.9828.seq
#    -bsequence dna-align/RBAM_011720___yjbV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01956___yjbV-RBAM_011720___yjbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01956___yjbV-RBAM_011720___yjbV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01956___yjbV
# 2: RBAM_011720___yjbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     601/843 (71.3%)
# Similarity:   601/843 (71.3%)
# Gaps:          57/843 ( 6.8%)
# Score: 2077.5
# 
#
#=======================================

BSNT_01956___      1 ATGAGTATATATAAAGCATTGACAATCGCCGGATCAGATTCAGGCGGCGG     50
                     |||||.||||..|||||||||||.||.|||||||||||||||||.|||||
RBAM_011720__      1 ATGAGCATATGCAAAGCATTGACGATTGCCGGATCAGATTCAGGAGGCGG     50

BSNT_01956___     51 CGCAGGGATACAGGCTGATATTAAAACCTTTCAAGAGCTTGATGTATTCG    100
                     |||.||.||||||||.|||.|.|||||||||||.|||||.|..||.||||
RBAM_011720__     51 CGCCGGTATACAGGCGGATCTCAAAACCTTTCAGGAGCTCGGCGTTTTCG    100

BSNT_01956___    101 GAATGTCTGCGATTACAGCGGTAACCGCTCAAAATACGCTTGGCGTTCAT    150
                     |.|||||.||.|||||||||||||||||.||.||.||..|.||||||||.
RBAM_011720__    101 GGATGTCAGCCATTACAGCGGTAACCGCCCAGAACACTTTGGGCGTTCAC    150

BSNT_01956___    151 GGGGTGCATCCGCTGACTGTAGAGGCGCTGAGACAGCAAATTGACGCTGT    200
                     ||..|..|||||||.||....||.||||||.|..|.||.||||||||.||
RBAM_011720__    151 GGCATTTATCCGCTCACCCGGGAAGCGCTGGGCAACCAGATTGACGCGGT    200

BSNT_01956___    201 TGCTGAGGATTTGAGACCGGATGCAGTCAAAACGGGAATGCTCTGGAATG    250
                     .||.||.||||||.|.||.||.||.||.||||||||||||||.||||..|
RBAM_011720__    201 GGCGGAAGATTTGCGGCCTGACGCTGTAAAAACGGGAATGCTGTGGAGCG    250

BSNT_01956___    251 CCGACATGATTGAAGAAGTGGCAAGAAAAATTGACG----AGTACGGATT    296
                     |.||.|||||||..|||.|.|| .||||||   |||    |||||||..|
RBAM_011720__    251 CGGAAATGATTGCGGAAATTGC-GGAAAAA---ACGGATCAGTACGGGCT    296

BSNT_01956___    297 CAATCGTGTAATTGTTGATCCGGTTATGATCGCAAAGGGCGGGGCATCCT    346
                     ..|||.|.|.||....||.||.||.|||||.||.||.||.||.||.|||.
RBAM_011720__    297 TGATCATCTCATCACGGACCCCGTCATGATTGCCAAAGGAGGCGCTTCCC    346

BSNT_01956___    347 TGCTGCGTGATGA--GTCAGTTGCCACCTTAAAGGAGTTGCTCATTCCAA    394
                     ||||||||||.||  .||||  |||.|.|||||.|||.||.|.|||||..
RBAM_011720__    347 TGCTGCGTGAGGAATCTCAG--GCCGCGTTAAAAGAGCTGTTAATTCCGC    394

BSNT_01956___    395 GAAGCTACGCGATTACGCCGAATGTCCCGGAAGCAGAAACGCTGACAGGA    444
                     |.|||||.|||.|.|||||||||||.||||||||.||.....||||.|||
RBAM_011720__    395 GCAGCTATGCGGTGACGCCGAATGTTCCGGAAGCTGAGGTATTGACGGGA    444

BSNT_01956___    445 ATGACAATCAGCTCGCTGGATGACCGGAAAAAAGCAGCAGAGCAGCTCGT    494
                     |||..|||..||.||.|.||.||||||||||||||.||.||.|..||...
RBAM_011720__    445 ATGGAAATACGCACGTTTGAGGACCGGAAAAAAGCGGCCGAACGCCTTTG    494

BSNT_01956___    495 CAAGATGGGTGCGCAGCATGTCATTATCAAAGGCGGGCACCAGCCTGA--    542
                     ||||.|.|||||..||||||||||.||.||||||||.|||||||||||  
RBAM_011720__    495 CAAGCTTGGTGCAAAGCATGTCATCATAAAAGGCGGACACCAGCCTGAAC    544

BSNT_01956___    543 ---GGACAATCACATTACTGACCTTCTT-TTTGATGGCAGCAT-----GT    583
                        |||..|||     ..||| .||.|| |||||.||     |     .|
RBAM_011720__    545 AGGGGAGGATC-----GTTGA-TTTATTATTTGACGG-----TTCGTCTT    583

BSNT_01956___    584 TTATGCAAATCACCCATCCTTATATCAATACGAAGCATACGCATGGCACA    633
                     |||..|||||||.|||..|||||||..|.||.||.||.||.||.||.|||
RBAM_011720__    584 TTACCCAAATCAGCCACGCTTATATTGACACCAAACACACCCACGGAACA    633

BSNT_01956___    634 GGCTGCACCTTTGCTGCGGCTTTAACGGCCCAAACGGCTAAAGGAG-ACA    682
                     ||||||||.||.||.||.||..|.|||||..||||||| |||||.| |.|
RBAM_011720__    634 GGCTGCACGTTCGCAGCCGCGCTGACGGCGGAAACGGC-AAAGGGGAAAA    682

BSNT_01956___    683 GCATCCATCAG---GCATTTGAGGTTGCGGCCAACTTTGTCCGTGAAGCG    729
                     .|||   ||||   ||.||||||...||.|.|||.|||||.||.|||||.
RBAM_011720__    683 ACAT---TCAGACCGCGTTTGAGACAGCCGTCAATTTTGTGCGGGAAGCC    729

BSNT_01956___    730 GTGGAAAATACGCTCGGCATCGGATCGGGACACGGGCCGACAAACCATTT    779
                     ||||||.|||||||.|||||.|||..|||||||||.|||||.||.|||||
RBAM_011720__    730 GTGGAACATACGCTTGGCATTGGAGAGGGACACGGCCCGACCAATCATTT    779

BSNT_01956___    780 CGCTTTTAAACGAAACAG-CTTAAATACAAGCCGATGA-----    816
                     .||.||||||.|.||||| ||         ||.||.||     
RBAM_011720__    780 TGCCTTTAAAAGGAACAGTCT---------GCAGACGAGATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01956 and RBAM_011720

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
