Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01944 and RBAM_011640

See Amino acid alignment / Visit BSNT_01944 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_01944___prpE.1.9828.seq
#    -bsequence dna-align/RBAM_011640___yjbP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01944___prpE-RBAM_011640___yjbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01944___prpE-RBAM_011640___yjbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01944___prpE
# 2: RBAM_011640___yjbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity:     565/783 (72.2%)
# Similarity:   565/783 (72.2%)
# Gaps:          81/783 (10.3%)
# Score: 2090.0
# 
#
#=======================================

BSNT_01944___      1 ATGGCTTACGATATCATCAGCGATATTCATGGCTGCTATGATGAAATGAC     50
                     ||||||||.||.||||||||||||||.||.||.||.|||||.|||||||.
RBAM_011640__      1 ATGGCTTATGACATCATCAGCGATATACACGGATGTTATGACGAAATGAT     50

BSNT_01944___     51 TGCATTAATCCAAAAGCTTGGCTATACAATCAAAAATGGAGTACCTGTCC    100
                     .||.|||||.||||||||.||.|||..|.|||||.|.|||...||.||.|
RBAM_011640__     51 CGCGTTAATGCAAAAGCTCGGATATGAAGTCAAAGACGGAACGCCCGTTC    100

BSNT_01944___    101 A---TGAAGAAGGCAGGGTGCTTGTTTTTGCCGGAGATTTAACTGACAGA    147
                     |   ||||||   ||||..||||||.|||||.||.||||||||.||||||
RBAM_011640__    101 ACTCTGAAGA---CAGGACGCTTGTCTTTGCGGGGGATTTAACGGACAGA    147

BSNT_01944___    148 GGGCCCAAATCGATAGAGGTCATCCGATTTGTAGCCGGC----GCTTACG    193
                     ||.||.|||||..||||.||.||.||.|||||    |||    ||.||.|
RBAM_011640__    148 GGCCCAAAATCCGTAGAAGTGATGCGTTTTGT----GGCAAAAGCATATG    193

BSNT_01944___    194 AAAAAGGCGCTGTGCGTTATGTCCCGGGAAACCATTGCAATAAATTATAT    243
                     |||||||.||.||.|||||||||||||||||.||||||||.|||.|.|||
RBAM_011640__    194 AAAAAGGAGCCGTCCGTTATGTCCCGGGAAATCATTGCAACAAACTGTAT    243

BSNT_01944___    244 CGTTACTTAAAAGGAAATCCGGTAAAAGTGATGCATGGTCTCGAAACAAC    293
                     |||||||||||||||||.||.||||||||||||||.||.||.|||||.||
RBAM_011640__    244 CGTTACTTAAAAGGAAACCCCGTAAAAGTGATGCACGGACTGGAAACGAC    293

BSNT_01944___    294 AGCGGC---------AGAGCT-------------TGA--GGAACTTTCCA    319
                     .||.||         ||||||             .||  ||||.|.||||
RBAM_011640__    294 GGCAGCCGAACTGAAAGAGCTGTCTCCCGCCGACAGAACGGAAGTCTCCA    343

BSNT_01944___    320 AAGATGAGAAAAAATCAGTCAGCGAACAGTT-TATGAAGCTGTACGAAAC    368
                             .|.||.||| ||.||      || |||||    ||      |
RBAM_011640__    344 --------GACAATTCA-TCCGC------TTATATGA----GT------C    368

BSNT_01944___    369 AGCGCCGCTTTACGACATCTTACATAATGGAGAATTAGTTGTCGCCCATG    418
                     ||||||||||||.|||||.|||||||||||.||..|.|||||||||||.|
RBAM_011640__    369 AGCGCCGCTTTATGACATTTTACATAATGGCGATCTCGTTGTCGCCCACG    418

BSNT_01944___    419 CTGGCATAAGAGCTGACGATATCGGCAAATATACCCGCAGAGTGAAGGAC    468
                     |.|||||||.|||||||||||||||.|||||..|.||.|..||.||.||.
RBAM_011640__    419 CCGGCATAAAAGCTGACGATATCGGTAAATACTCGCGTAAGGTAAAAGAA    468

BSNT_01944___    469 TTTGTGCTTTACGGTGACGTGACGGGTGAAACATATCCGGACGGCAGACC    518
                     |||||.||.|||||.||..|.|||||||||||..||||.|||||||||||
RBAM_011640__    469 TTTGTTCTGTACGGCGATATCACGGGTGAAACGCATCCCGACGGCAGACC    518

BSNT_01944___    519 CGTCAGACGTGATTGGGCGGCAGCCTATAACGGAAAGGCTTGGGTGGTAT    568
                     |||||||.|.||.|||||.||.||.|||.|.||.|||||.|||.|.||.|
RBAM_011640__    519 CGTCAGAAGAGACTGGGCCGCCGCTTATGAAGGCAAGGCATGGATTGTTT    568

BSNT_01944___    569 ACGGTCATACACCTGTGAAAGAACCTCGAAAGGTCAATCGCACCATCAAC    618
                     ||||.|||||.||.||.|||...||.||.|..|||||.||.||.||||||
RBAM_011640__    569 ACGGCCATACCCCGGTAAAACGCCCACGGATCGTCAACCGTACAATCAAC    618

BSNT_01944___    619 ATTGATACAGGCTGCGTGTTCGGAAATCAACTGACAGGCTTTCGCTTTCC    668
                     |||||||||||.|||||.|||||.||||||||||||||||||||||||||
RBAM_011640__    619 ATTGATACAGGATGCGTCTTCGGCAATCAACTGACAGGCTTTCGCTTTCC    668

BSNT_01944___    669 AGA-AATAGAAACCGTCTCTGTTCCAAGCTCCTTGCCTTACGACGAATCA    717
                     .|| .|| ||||||||||||||...||||||..||||.||.||.|..|||
RBAM_011640__    669 GGAGCAT-GAAACCGTCTCTGTGGAAAGCTCAATGCCCTATGATGCTTCA    717

BSNT_01944___    718 AGATTTCGC----CCCATATAA-----------    735
                     .||||||||    ..||...||           
RBAM_011640__    718 CGATTTCGCGAGGATCACGGAAGGCAGGCATGA    750


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