Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01942 and RBAM_011620

See Amino acid alignment / Visit BSNT_01942 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_01942___ppnK.1.9828.seq
#    -bsequence dna-align/RBAM_011620___ppnK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01942___ppnK-RBAM_011620___ppnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01942___ppnK-RBAM_011620___ppnK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01942___ppnK
# 2: RBAM_011620___ppnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     648/806 (80.4%)
# Similarity:   648/806 (80.4%)
# Gaps:          10/806 ( 1.2%)
# Score: 2595.5
# 
#
#=======================================

BSNT_01942___      1 ATGAAATTTGCCGTATCATCAAAAGGAGATCAAGTTTCTGATACGCTGAA     50
                     ||||||||||||||.||.|||||||||||..|.|||||.|||||.|||||
RBAM_011620__      1 ATGAAATTTGCCGTTTCTTCAAAAGGAGACGAGGTTTCAGATACACTGAA     50

BSNT_01942___     51 AAGCAAAATACAGGCGTATTTATTGGATTTTGATATGGAAC--TGGATGA     98
                     ||||||||||||||||||||||.|.||||||||||||  ||  |||||||
RBAM_011620__     51 AAGCAAAATACAGGCGTATTTACTCGATTTTGATATG--ACCTTGGATGA     98

BSNT_01942___     99 AAATGAACCGGAAATCGTTATTTCAGTCGGAGGCGACGGAACGCTTTTGT    148
                     |||.||.|||||||||||.|||||.|||||.||.||||||||||||.|.|
RBAM_011620__     99 AAAAGAGCCGGAAATCGTGATTTCCGTCGGCGGTGACGGAACGCTTCTTT    148

BSNT_01942___    149 ATGCTTTTCACAGATACAGCGACCGCTTGGACAAAACAGCATTTGTCGGC    198
                     |.||.||||||||.|||||||||||..|.||.|||||.||.||||||||.
RBAM_011620__    149 ACGCATTTCACAGGTACAGCGACCGTCTCGATAAAACGGCGTTTGTCGGA    198

BSNT_01942___    199 GTTCACACAGGTCATCTGGGTTTTTATGCCGACTGGGTTCCTCATGAAAT    248
                     ||||||||.||.|||.||||||||||||||||.||||||||.||.||.||
RBAM_011620__    199 GTTCACACGGGGCATTTGGGTTTTTATGCCGATTGGGTTCCGCAGGAGAT    248

BSNT_01942___    249 TGAAAAACTTGTTCTTGCCATCGCGAAAACGCCGTATCATACAGTCGAAT    298
                     .|||||.||.|||||.||.||.||.|||||||||||||||||.||.||.|
RBAM_011620__    249 AGAAAAGCTCGTTCTGGCTATTGCCAAAACGCCGTATCATACCGTGGAGT    298

BSNT_01942___    299 ATCCGCTTCTCGAAGTCATTGTGACCTATCACGAAAACGAGCGGGAAGAA    348
                     ||||.|||||.||.||.|||||.||.|||||.||..|.|||||.||.||.
RBAM_011620__    299 ATCCCCTTCTTGAGGTGATTGTCACTTATCATGATGAAGAGCGTGAGGAG    348

BSNT_01942___    349 AGATACTTAGCTTTGAATGAATGTACGATTAAAAGCATCGAAGGAAGCCT    398
                     .|.||..|.||||||||.|||||||||||.||||||||.|||||.||.||
RBAM_011620__    349 CGGTATCTGGCTTTGAACGAATGTACGATCAAAAGCATAGAAGGCAGTCT    398

BSNT_01942___    399 TGTTGCTGATGTGGAAATCAAAGGGCAGCTCTTTGAAACCTTCCGGGGCG    448
                     .||.|||||.||||||||.|||||.|||||.||||||||.|||.||||.|
RBAM_011620__    399 CGTCGCTGACGTGGAAATTAAAGGCCAGCTGTTTGAAACGTTCAGGGGGG    448

BSNT_01942___    449 ACGGCCTCTGCCTGTCAACTCCATCAGGCAGCACAGCCTACAATAAGGCG    498
                     ||||..|.||.|||||.||.||.||.||.|||||.||.||.|||||||||
RBAM_011620__    449 ACGGTTTATGTCTGTCCACGCCTTCCGGAAGCACGGCTTATAATAAGGCG    498

BSNT_01942___    499 CTGGGCGGAGCGATTATCCATCCGTCTATCAGGGCGATCCAGCTTGCGGA    548
                     .|.|||||.|||||.|||||.||.||.|||||.|||||.||||||||.||
RBAM_011620__    499 TTAGGCGGCGCGATCATCCACCCTTCCATCAGAGCGATTCAGCTTGCAGA    548

BSNT_01942___    549 AATGGCTTCAATTAATAACCGCGTGTTCCGTACGGTCGGGTCACC---TC    595
                     ||||||.||.||.||.|||.|.||||||.|.||.|||||.||.||   |.
RBAM_011620__    549 AATGGCATCCATCAACAACAGAGTGTTCAGGACTGTCGGCTCGCCGCTTT    598

BSNT_01942___    596 TGCTTCTCCCATCCCATCATGATTGCATGATTAAGCCGAGAAACGAAGTT    645
                     |||||| ||.||  ||||||.|.||..|.||.||.|||||||||||.||.
RBAM_011620__    599 TGCTTC-CCGAT--CATCATAACTGTGTCATCAAACCGAGAAACGACGTC    645

BSNT_01942___    646 GACTTTCAAGTGACGATTGACCATTTAACCCTTCTCCATAAGGATGTAAA    695
                     |||||||||||.||.|||||.|||||||||.|.||.|||||||||||.||
RBAM_011620__    646 GACTTTCAAGTCACAATTGATCATTTAACCTTGCTGCATAAGGATGTCAA    695

BSNT_01942___    696 GTCGATCCGCTGCCAAGTTGCATCCGAAAAAGTGCGGTTTGCGAGATTCC    745
                     |||.||.|..||||..||.|||...||||||||..|.|||||.|||||||
RBAM_011620__    696 GTCCATTCTATGCCGTGTGGCAAATGAAAAAGTCAGATTTGCAAGATTCC    745

BSNT_01942___    746 GTCCGTTTCCATTTTGGAAAAGAGTCCAGGATTCGTTTATTGGAAAAGGT    795
                     ||||.|||||.|||||||||||.||.||||||||.|||||.||||||||.
RBAM_011620__    746 GTCCTTTTCCGTTTTGGAAAAGGGTGCAGGATTCCTTTATCGGAAAAGGC    795

BSNT_01942___    796 GAATAG    801
                     ||||||
RBAM_011620__    796 GAATAG    801


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