Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01940 and RBAM_011600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_01940___yjbL.1.9828.seq
# -bsequence dna-align/RBAM_011600___yjbL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01940___yjbL-RBAM_011600___yjbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01940___yjbL-RBAM_011600___yjbL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01940___yjbL
# 2: RBAM_011600___yjbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 375
# Identity: 293/375 (78.1%)
# Similarity: 293/375 (78.1%)
# Gaps: 15/375 ( 4.0%)
# Score: 1132.5
#
#
#=======================================
BSNT_01940___ 1 ATGCAAAACAGAATCGAAATTTTGAATGCAACATTATCGGATGATCAGCT 50
||||||||.|||||.|||||....||||||.|||||.|.||.||...|||
RBAM_011600__ 1 ATGCAAAAGAGAATTGAAATCCAAAATGCATCATTAACAGAAGACGCGCT 50
BSNT_01940___ 51 TCGCCTTACTTGTCAGACAGA-AGG----AAACGAAGCGGAACGC-AAGC 94
.|||.|.|..|| |.|| ||| ||.||.|||||||||| ||||
RBAM_011600__ 51 CCGCTTGAAGTG-----CGGAGAGGACTTAAGCGGAGCGGAACGCAAAGC 95
BSNT_01940___ 95 CGTCAGGTCAAATGCTTGTTGATTCTGACCACTTTGCTTTTGTATACATA 144
| |||||||||||||||||||||||.||.|||||||||||||||||||||
RBAM_011600__ 96 C-TCAGGTCAAATGCTTGTTGATTCCGATCACTTTGCTTTTGTATACATA 144
BSNT_01940___ 145 CTTGAATTAGCTGATTCTTTTGAATATGTCATTATAAAGGAACATGTATG 194
|||||||.||||||.|||||||||||||||||||||||.||||||.|.||
RBAM_011600__ 145 CTTGAATCAGCTGACTCTTTTGAATATGTCATTATAAAAGAACATATCTG 194
BSNT_01940___ 195 GCCGGAACTGAAGCAGGCCCATGCACAAAAAATACCGGTTGTTTTAGAGG 244
||||||.|||||..|.|||...|..||||.||.|||||..||..|.||||
RBAM_011600__ 195 GCCGGATCTGAAAGAAGCCTTAGACCAAAGAAAACCGGCGGTCCTTGAGG 244
BSNT_01940___ 245 CAGGAGACCAAACAATTGAACTGGCAGGCCTGCATGAGGAGCTGGAATAT 294
|.||.|...||||..|||||||..||||.||||||||.||.||.||.|||
RBAM_011600__ 245 CCGGCGGAAAAACGGTTGAACTTTCAGGGCTGCATGAAGAACTCGATTAT 294
BSNT_01940___ 295 CTTTTAGAAAATATAAAAGATAATGCAAACTATGGAGAAGAAATGGAAGA 344
|||.|.||||||||.|||||||||||||||||.|| |||.||||||||
RBAM_011600__ 295 CTTCTTGAAAATATTAAAGATAATGCAAACTACGG---AGATATGGAAGA 341
BSNT_01940___ 345 AAAAGTGAAACACGTGTTTTTATAG 369
||||||||||.||||.|||.|.|||
RBAM_011600__ 342 AAAAGTGAAAAACGTATTTCTTTAG 366
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