Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01938 and RBAM_011590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_01938___yjbK.1.9828.seq
# -bsequence dna-align/RBAM_011590___yjbK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01938___yjbK-RBAM_011590___yjbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01938___yjbK-RBAM_011590___yjbK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01938___yjbK
# 2: RBAM_011590___yjbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 614
# Identity: 418/614 (68.1%)
# Similarity: 418/614 (68.1%)
# Gaps: 82/614 (13.4%)
# Score: 1336.5
#
#
#=======================================
BSNT_01938___ 1 ATGAGCCAAGAAATTGAAATCGAATTTAAAAACATGCTGACCAAACAAGA 50
||||.|||||||||.|||||.|||||.||||||.|||||||.|||..|||
RBAM_011590__ 1 ATGACCCAAGAAATAGAAATTGAATTCAAAAACCTGCTGACAAAATCAGA 50
BSNT_01938___ 51 ATTCAAAAACAT----AGCAGCG----GCACTC--CAGCTGACAGAAAAA 90
||| | |||.|.| |||||| || |||.||||.|.
RBAM_011590__ 51 ATT--------TCTGAAGCTGAGTGAAGCACTCTGCA--TGAAAGAACAT 90
BSNT_01938___ 91 GATTTTA-----CAGATCAAAAGAATCATTATTTTGATACAGACAG-CTT 134
||||||| |||.|| |||||||||||.||.||.|| || .||
RBAM_011590__ 91 GATTTTAAACAGCAGGTC-----AATCATTATTTCGACACGGA-AGATTT 134
BSNT_01938___ 135 CGCGCTGAAACAAAAACAAGCTGCGCTTCGTATCCGCAGAAAAA-ACGGA 183
..|.||||||||||||.||.|.||.||.||.||||| ||||||| ||||.
RBAM_011590__ 135 TTCCCTGAAACAAAAAAAATCAGCACTCCGCATCCG-AGAAAAAGACGGC 183
BSNT_01938___ 184 AAGTATGTCCTTACATTAAAGGAGCCGGCTGATGTGGGGCTTCTGGAAAC 233
..||..||.||.||.|||||.|||||.||.|..||.||.||.||||||||
RBAM_011590__ 184 GCGTTCGTTCTGACGTTAAAAGAGCCTGCCGCGGTCGGTCTGCTGGAAAC 233
BSNT_01938___ 234 GCACCAGCAGCTTTCAGAGGTATCAGATCTCGCTGGATTTTCA--GTTCC 281
.|||||..||||| |.||.|.|.|||||.|..| |.|||| .||||
RBAM_011590__ 234 CCACCAAGAGCTT---GCGGCACCTGATCTTGACG--TCTTCAAGATTCC 278
BSNT_01938___ 282 CGAGGGCCCTGTGAAGGAC--CAGCTGCACAAGCTTCAGATCGATACGGA 329
.||.|||||.||.|| || ||||||.| ||.|| .||||
RBAM_011590__ 279 GGATGGCCCCGTCAA--ACGTCAGCTGGA--------AGGTC---TCGGA 315
BSNT_01938___ 330 TGCCATTC--AATACTTTGGATCTTTAGCAA------CAAAC---CGTGC 368
..|.|.|| ||.||.||.|.|.|||.|.|| |.|.| ||.||
RBAM_011590__ 316 ATCAACTCAGAACACATTTGCTATTTCGGAACGCTGTCGACCGCACGCGC 365
BSNT_01938___ 369 GGAAAAAGAAACAGAAAAAGGCTTAATAGTTTTAGACCACAGCCGATATT 418
||||||||||.||||||||||||||||..|||||||.|||||||||||||
RBAM_011590__ 366 GGAAAAAGAATCAGAAAAAGGCTTAATCATTTTAGATCACAGCCGATATT 415
BSNT_01938___ 419 TAAATAAAGAGGACTATGAAATTGAATTTGAGGCGGCGGATTGGCATGAG 468
||.|.|||||.||||.||||.|.|||||.||.||.||.||.|||.||||.
RBAM_011590__ 416 TAGAGAAAGAAGACTTTGAATTGGAATTCGAAGCTGCTGACTGGGATGAA 465
BSNT_01938___ 469 GGCAGAAAA---GCTTTCGAGAAGCTGCTTCAGCAATTCAGCATTCCTCA 515
| ||||| ||.||.||..|..||||..||||||||.|||| |.||
RBAM_011590__ 466 G---GAAAACGGGCGTTTGAACAATTGCTCAAGCAATTCGGCAT--CCCA 510
BSNT_01938___ 516 GCGCGAA--ACCAAAAATAAAATTCTGCGTTTTTATGAAGAAAAACGAAA 563
|.|||.| ||.|||||||||||.|.|||||||||||||.|.||||.|||
RBAM_011590__ 511 GAGCGGATCACGAAAAATAAAATCCAGCGTTTTTATGAACAGAAACAAAA 560
BSNT_01938___ 564 ----GTCTATATAA 573
||..| ||.|
RBAM_011590__ 561 AAAGGTGGA-ATGA 573
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