Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01936 and RBAM_011580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_01936.1.9828.seq
# -bsequence dna-align/RBAM_011580___yjbJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01936-RBAM_011580___yjbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01936-RBAM_011580___yjbJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01936
# 2: RBAM_011580___yjbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity: 497/768 (64.7%)
# Similarity: 497/768 (64.7%)
# Gaps: 114/768 (14.8%)
# Score: 1581.5
#
#
#=======================================
BSNT_01936 1 GTGAATGTAACGAATTGGGCAGCTTTACTTCAGCTTCA------GGCACT 44
||||||.|.|||||||||||.||..|.||.|||||.|| |||.||
RBAM_011580__ 1 GTGAATATCACGAATTGGGCGGCCCTTCTCCAGCTGCAATCAATGGCGCT 50
BSNT_01936 45 ACAGTCCATATCTAATGCACGCAGCAGCT-----CGGACACTCAGAATAC 89
.||.||.||.|||.||.||.||| |.||| ||||||.|| |.|
RBAM_011580__ 51 GCAATCAATCTCTCATACAAGCA-CGGCTTCAGGCGGACAATC----TTC 95
BSNT_01936 90 GGAAAGCCCGCTTTCAAGTTTTAGCTCTTTGCTCAGCCAATATAC----- 134
.||||||||||||.|||.|||.|||.|..|.||||||||.|||||
RBAM_011580__ 96 AGAAAGCCCGCTTGCAAATTTCAGCGCGCTTCTCAGCCAGTATACGGACA 145
BSNT_01936 135 AAACGGTCTGACATCTCAGC---AATCAGCACTTTCTTCATCGCCAAGC- 180
.|.|.|||.|.|| .|||| ||||||.|.|| ||.|.||....||
RBAM_011580__ 146 CAGCCGTCCGGCA--GCAGCCGGAATCAGGAATT--TTAAACGGTGTGCG 191
BSNT_01936 181 --CCGCTCA-GCATGCTGAACAGCGCGAATACAACAGCGCCGTCACTGCT 227
||||||| ||.|..|...||.||.||||.| ||| |
RBAM_011580__ 192 GACCGCTCACGCTTCATATTCACCGAGAATTC-------CCG-------T 227
BSNT_01936 228 TTCAGCGTATGGGCTTAACTCATATACG-AGCAGCAATTCAAGTTCAGTC 276
||||.| .||| |.|| .||.|| |||| |||
RBAM_011580__ 228 TTCATC----CGGC----------TCCGCGGCTGC--TTCA----CAG-- 255
BSNT_01936 277 ACAAAAGC-------GGCAGAAAGCACTGAAACAGCTGCTGCAGATTCAG 319
|..|| ||||.|||| .||.|.|||.|.|
RBAM_011580__ 256 ---ACCGCTTCCCCGGGCATAAAG-------------TCTCCGGATGCGG 289
BSNT_01936 320 CTTCAAACAAACATGAAGCAAATCAGATCAGTTCGGGAGACTTCTCTATT 369
|||| |.|.|||||..|.|||.||||.||.||.
RBAM_011580__ 290 CTTC------------------TGATATCAGCACCGGAAACTTTTCAATA 321
BSNT_01936 370 GACAGTGCGATTAAAAAAGCCGCTGATAAATATGGCGTTGATGAAAAACT 419
|||||.||.|||.|.|||||.||.||.|||||.||.||.||.|||||.||
RBAM_011580__ 322 GACAGCGCCATTCAGAAAGCGGCCGAAAAATACGGAGTGGACGAAAAGCT 371
BSNT_01936 420 GATCCGTGCCGTCATCAAACAGGAATCAGGCTTTAATGCAAAAGCGGTCA 469
||||||.||.||.||.||||||||||||||||||.||.|.||||||||||
RBAM_011580__ 372 GATCCGCGCGGTTATTAAACAGGAATCAGGCTTTGATCCGAAAGCGGTCA 421
BSNT_01936 470 GCGGAGCAGGTGCGATGGGCCTCATGCAGCTGATGCCGTCAACAGCAAGC 519
||||.||.||.||.|||||.||.||||||||.|||||.||.||.|||...
RBAM_011580__ 422 GCGGTGCGGGGGCAATGGGACTGATGCAGCTCATGCCTTCCACGGCAGAA 471
BSNT_01936 520 TCACTTGGCGTTTCCAATCCGCTTGATCCGCAGCAAAATGTGGAGGGCGG 569
|||||.||.||.||.||.|||||||||||....||.||.|..||||||||
RBAM_011580__ 472 TCACTCGGGGTGTCAAACCCGCTTGATCCCGTCCAGAACGCTGAGGGCGG 521
BSNT_01936 570 AACGAAATATTTAAAACAAATGCTGGATAAATACGGCGGCAATGTGTCTA 619
.||.||.||.|||||.||.|||||....|||||||.|||.|||||.|||.
RBAM_011580__ 522 CACAAAGTACTTAAAGCAGATGCTCACGAAATACGACGGAAATGTATCTC 571
BSNT_01936 620 TGGCATTAGCGGCTTACAACGCCGGACCGGGGAATGTTGACCGATACGGA 669
||||.|||||.||.||||||||.||.||.||.||.||.||.||.||||||
RBAM_011580__ 572 TGGCGTTAGCCGCCTACAACGCAGGCCCCGGCAACGTAGATCGGTACGGA 621
BSNT_01936 670 GGCATTCCTCCTTTCCAAGAAACGAAAAACTATGTAAAAAAAATAAC--T 717
||||||||.||.||..|.|||||..|..|.|||||.|||||.||||| .
RBAM_011580__ 622 GGCATTCCGCCGTTTAAGGAAACACAGCAATATGTCAAAAACATAACCAA 671
BSNT_01936 718 TCAGCTTATTACGCGTAA 735
.||| ||||||||||||
RBAM_011580__ 672 ACAG--TATTACGCGTAA 687
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