Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01907 and RBAM_011400

See Amino acid alignment / Visit BSNT_01907 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:39
# Commandline: needle
#    -asequence dna-align/BSNT_01907___appC.1.9828.seq
#    -bsequence dna-align/RBAM_011400___appC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01907___appC-RBAM_011400___appC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01907___appC-RBAM_011400___appC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01907___appC
# 2: RBAM_011400___appC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity:     670/940 (71.3%)
# Similarity:   670/940 (71.3%)
# Gaps:          53/940 ( 5.6%)
# Score: 2256.0
# 
#
#=======================================

BSNT_01907___      1 ATGTCAGAGCTGCAAACA-------ACTCCCTCGCCGGAG----ATCAGG     39
                     ||||.|.|||  ||||.|       || |||.|..||.||    ||    
RBAM_011400__      1 ATGTTACAGC--CAAATACCGGCACAC-CCCCCAGCGAAGTAAAAT----     43

BSNT_01907___     40 CTGAAAGAAAATATT---TCGAAAAAGCCAGAAACAATGACAAAGATTTT     86
                      |.||.|||||||||   ||.|||   ||.|||||||||||.||||||||
RBAM_011400__     44 -TAAAGGAAAATATTCAATCCAAA---CCGGAAACAATGACGAAGATTTT     89

BSNT_01907___     87 CTGGGGAAAATTCTCGAAAAACAAACTGGCCATTTTAGGTGCCGTTATTC    136
                     .|..|.|||.||||...||||.|||||.||..|..|.||.|||||||   
RBAM_011400__     90 TTTCGAAAAGTTCTTTCAAAATAAACTAGCTGTAATCGGAGCCGTTA---    136

BSNT_01907___    137 TTTTT----ATCATTATTATGTCGGCTGTTTTCGCTCCTTTAATTGCACC    182
                      |.||    |||||.||..||||.||..|.||||||.|..||||.||.||
RBAM_011400__    137 -TATTAACCATCATCATCTTGTCAGCCTTATTCGCTTCGGTAATCGCTCC    185

BSNT_01907___    183 TTA-TC-CCCAAGAGCAGCAAAGCCTGCTTGATAAA----TATAAGGCGC    226
                     ||| || ||..||||  .|||  .|| ||| ||.||    |..|||.|||
RBAM_011400__    186 TTACTCTCCGGAGAG--TCAA--TCT-CTT-ATCAATCGTTTGAAGCCGC    229

BSNT_01907___    227 CGGGCCTTGAACATCTGATGGGAACGGATAAATTTGGACGTGATATTTTC    276
                     ||.||.|..|||||||.||||||||.||||||||.|||.|.||.||.||.
RBAM_011400__    230 CGAGCTTAAAACATCTAATGGGAACTGATAAATTCGGAAGAGACATCTTT    279

BSNT_01907___    277 AGCCG-GA-TCCTATATGGAGCGCGTGTCTCTTTATTGGTTGGATTTGCG    324
                     |  || || |.||.||.||.|||||.|||||.||..|.||.|||||.||.
RBAM_011400__    280 A--CGAGAGTTCTGTACGGGGCGCGCGTCTCCTTGCTTGTCGGATTCGCT    327

BSNT_01907___    325 TCCGTAGTCGGCTCGATTTTGATCGGAACGGTTTTAGGAGCATTAGCCGG    374
                     ||.||..|||||.|||||...|||||.||.|||.|.|||||..|.|||||
RBAM_011400__    328 TCTGTGATCGGCGCGATTACAATCGGGACAGTTGTCGGAGCCGTTGCCGG    377

BSNT_01907___    375 ATATTTCAGAGGAATAGTGGATGCTGTCATTATGCGTGTAGTTGACATTG    424
                     ||||||.|.|||.||.||.|||||.||..|.|||.|....|||||.||||
RBAM_011400__    378 ATATTTTAAAGGGATTGTCGATGCCGTTCTCATGAGAACCGTTGATATTG    427

BSNT_01907___    425 TGTTATCCATTCCTGATATTTTCTTGTTGATCACGCTGGTCACCATCTTC    474
                     |.||||||||.||||||||.||.|||.|.||.||.||.||.||.||.||.
RBAM_011400__    428 TATTATCCATACCTGATATATTTTTGCTTATTACACTTGTTACGATTTTT    477

BSNT_01907___    475 AAGCCGGGTGTGGACAAACTGATTTTAATTTTCTGTCTCACAGGATGGAC    524
                     .||||.||..||||.|||.|.|||||||||||||..||.|||||.|||||
RBAM_011400__    478 CAGCCCGGAATGGATAAATTAATTTTAATTTTCTCCCTTACAGGCTGGAC    527

BSNT_01907___    525 CACAACAGCACGATTAGT--AAGGGGAGAATTCTTGTCGCTCCGTTCAAG    572
                     .|||||.|||||..|.||  .|||||||  ||.||.|||||.|||||.||
RBAM_011400__    528 AACAACGGCACGCCTTGTGCGAGGGGAG--TTTTTATCGCTTCGTTCCAG    575

BSNT_01907___    573 GGAATATGTTCTTGCTGCTAAAACAATTGGAACAAAAACGCACAAAATTA    622
                     .||||.|||.||.|||||.||.||.||.||.|||||||..||..|.||||
RBAM_011400__    576 AGAATTTGTACTGGCTGCAAAGACGATCGGTACAAAAAATCATCATATTA    625

BSNT_01907___    623 TTTTTTCTCATATCCTGCCCAATGCGTTAGGGCCGATTATCGTGTCAGCT    672
                     |||||||||||||..||||.||||||.|.|||||||||||.||.||.||.
RBAM_011400__    626 TTTTTTCTCATATATTGCCGAATGCGCTTGGGCCGATTATTGTCTCGGCC    675

BSNT_01907___    673 ACGCTGAAAGTAGGGTCTGTTATTCTAGCTGAATCGGCGCTAAGCTACTT    722
                     ||..|.||.||.||..|.||||||.|.||.|||||..|..|.||.||..|
RBAM_011400__    676 ACATTAAAGGTCGGAACGGTTATTTTGGCAGAATCTACATTGAGTTATCT    725

BSNT_01907___    723 GGGCTTTGGAATCCAGCCGCCAATCGCTAGCTGGGGGAACATGCTTCAAG    772
                     .||.||.||.||.||||||||.|||||.||||||||.||.||||||||.|
RBAM_011400__    726 CGGTTTCGGGATTCAGCCGCCGATCGCAAGCTGGGGCAATATGCTTCAGG    775

BSNT_01907___    773 ACGCACAGAATTTCACAGTAATGATTCAAGCATGGTGGTACCCGTTATTT    822
                     |.||||||||.||.||..|.||||||||.||.|||||||||||||||||.
RBAM_011400__    776 ATGCACAGAACTTTACGCTTATGATTCAGGCTTGGTGGTACCCGTTATTC    825

BSNT_01907___    823 CCCGGGCTATTTATTTTAATGACCGTTTTATGCTTCAACTTTGTCGGTGA    872
                     ||.||..|.||.||..|..|.|||||.||.|||||.|||||||||||.||
RBAM_011400__    826 CCAGGTTTGTTGATCCTTCTTACCGTATTGTGCTTTAACTTTGTCGGAGA    875

BSNT_01907___    873 TGGCCTGCGGGATGCGCTTGATCCGAAAAATATTAAATAA    912
                     .||.|||||.|||||||||||||||||||||.|.||||.|
RBAM_011400__    876 CGGGCTGCGTGATGCGCTTGATCCGAAAAATGTGAAATGA    915


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01907 and RBAM_011400

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
