Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01900 and RBAM_011350

See Amino acid alignment / Visit BSNT_01900 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_01900___yjaZ.1.9828.seq
#    -bsequence dna-align/RBAM_011350___yjaZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01900___yjaZ-RBAM_011350___yjaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01900___yjaZ-RBAM_011350___yjaZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01900___yjaZ
# 2: RBAM_011350___yjaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity:     577/831 (69.4%)
# Similarity:   577/831 (69.4%)
# Gaps:          90/831 (10.8%)
# Score: 1889.5
# 
#
#=======================================

BSNT_01900___      1 ATGAGTGTAGAACAAACATATAGCTGGCTCAGG--AAGGCCGGTTCAATA     48
                     |||||.||..|.||.||||||...|||.|  ||  |||||.|..||..||
RBAM_011350__      1 ATGAGCGTCAAGCAGACATATCAATGGAT--GGAAAAGGCGGCATCCGTA     48

BSNT_01900___     49 GATGATTTGG---CGCA-CTACATTATCCCGCTTTTTTCAGGTGCGGAGA     94
                     .|||||.|||   |||| |    ||.|.||||||||||||||.||.||.|
RBAM_011350__     49 AATGATCTGGCCCCGCATC----TTTTGCCGCTTTTTTCAGGGGCCGATA     94

BSNT_01900___     95 A-AAAGAACTGGAAGGGCATTCT-GGGACACCTTCAGCATCATGGGATGT    142
                     | |||| |.||||||...||.|| |||| ..||.||..|.||.||.||||
RBAM_011350__     95 AGAAAG-AGTGGAAGCCAATACTCGGGA-TGCTGCAAAACCACGGCATGT    142

BSNT_01900___    143 -------TTAAAAACATAAAAGAGGGTATT-----CAG---ACGGTTTCC    177
                            ||       |.||.||.||..||     |||   |||      
RBAM_011350__    143 TCCGCCATT-------TGAAGGACGGCGTTAGGACCAGTAAACG------    179

BSNT_01900___    178 AAGCTGAAGGAAAAAGGTTTTTACGGACATATCCAAAAGGAAGAACAGTA    227
                       ||||||.||||||||.|..|||.|.|||||.||||||||.|||...||
RBAM_011350__    180 --GCTGAAAGAAAAAGGATGCTACAGCCATATTCAAAAGGAGGAAGCTTA    227

BSNT_01900___    228 CCTCAAAAACAAATGGCAAGGTCCTGATGTACCAATTG----TTACGCTG    273
                     ..|.||..|.||.|||.|.||.||.||.||.||.||.|    ||    ||
RBAM_011350__    228 TTTAAAGGAGAAGTGGAACGGGCCGGACGTGCCGATCGTAGTTT----TG    273

BSNT_01900___    274 CCGGTTGATGAACGAAACAGGAGAATCCGTTTAGAGTTCGGATCAAAATC    323
                     ||.||.||||||||||||.|||.|||||||...||.||||||||||||||
RBAM_011350__    274 CCCGTCGATGAACGAAACCGGAAAATCCGTCAGGAATTCGGATCAAAATC    323

BSNT_01900___    324 AGGACTCGCCTTTCAAGACAAAATGTTCCTTTTTCTTTCGTCAGAT--TT    371
                     .||.||.|||||||..||||||||||||||.|||||.|||||.|||  ||
RBAM_011350__    324 CGGTCTGGCCTTTCGGGACAAAATGTTCCTCTTTCTATCGTCGGATAGTT    373

BSNT_01900___    372 AGATTTTGGGTCGGTATCTGCCCTTATGACGCATGAGTATCATCACGTTT    421
                     ..|.||..|  |.|||||.|||||||||||.|||||.|||.|||||||.|
RBAM_011350__    374 CCAATTCAG--CTGTATCCGCCCTTATGACACATGAATATAATCACGTCT    421

BSNT_01900___    422 GCCGGTTAGGTCATCTGACAAAAGAGGAAAAGGATGTCACATTACTTGAT    471
                     |||||||||..|||.|||||||.||.|||||.||.|..|||||.||||||
RBAM_011350__    422 GCCGGTTAGAGCATGTGACAAAGGACGAAAAAGACGAGACATTTCTTGAT    471

BSNT_01900___    472 ACAATCATCATGGAAGGGCTGGCGGAATATGCTGTTTATGAGAGGTTCGG    521
                     ||||||||.|||||.||||||||.|||||||||||.||||||.|||||||
RBAM_011350__    472 ACAATCATGATGGAGGGGCTGGCAGAATATGCTGTATATGAGCGGTTCGG    521

BSNT_01900___    522 CCGAAGCCAAACGGCTGAGTGGACGACTTGGTATACACCGGAGCAGCTTC    571
                     |..|||.|..|||||.||.||||||.|.|..|||||.||.|||||||||.
RBAM_011350__    522 CTCAAGTCTTACGGCGGAATGGACGTCCTACTATACGCCTGAGCAGCTTG    571

BSNT_01900___    572 AGGCTTTATATGAAAAAAAGATTGC--GCC---CCATCGGGATATCAAAC    616
                     |...|.|.|.|| ||||||||.| |  |||   || ||.|..|    |||
RBAM_011350__    572 ATTTTCTGTTTG-AAAAAAGAGT-CAAGCCGAACC-TCCGCTT----AAC    614

BSNT_01900___    617 GGGATA-ATC-GATTATTTCCCCAACTGTTATTCGGCAAAGGATA--TCA    662
                     |.||.| |.| ||.|.|||.||||.|||||||.|||.||||||||  || 
RBAM_011350__    615 GAGAGACAGCAGAATGTTTTCCCAGCTGTTATACGGAAAAGGATACTTC-    663

BSNT_01900___    663 GCCAAAAATGCTTGGATACGCAGTTGGATTCAATATTGTAAAAAAATATT    712
                      ||...||||||.||.||.||.||.|||||||||||.|||||||||||||
RBAM_011350__    664 -CCCTCAATGCTCGGCTATGCCGTCGGATTCAATATAGTAAAAAAATATT    712

BSNT_01900___    713 TAACCG-CCAGCA------AGGCAAGCGCCGCAGACGGGCTGTCCATTCC    755
                     |||||| |||.||      ||..||       |||.|...||.||||.||
RBAM_011350__    713 TAACCGACCATCAAAAAACAGTAAA-------AGAAGCATTGGCCATCCC    755

BSNT_01900___    756 TGCTGAAACCTTTTTGGATGCAATGCTTTAA    786
                     |.|..||||||||.||||.||||.|||||||
RBAM_011350__    756 TTCAAAAACCTTTCTGGAGGCAACGCTTTAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01900 and RBAM_011350

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
