Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01894 and RBAM_011300

See Amino acid alignment / Visit BSNT_01894 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_01894___med.1.9828.seq
#    -bsequence dna-align/RBAM_011300___med.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01894___med-RBAM_011300___med.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01894___med-RBAM_011300___med.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01894___med
# 2: RBAM_011300___med
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity:     737/970 (76.0%)
# Similarity:   737/970 (76.0%)
# Gaps:          32/970 ( 3.3%)
# Score: 2770.0
# 
#
#=======================================

BSNT_01894___      1 TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGG     50
                     ||||||||.||||||||||||||||||||||||||||||||||||||.||
RBAM_011300__      1 TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGG     50

BSNT_01894___     51 ATGTGGAAAAACTCCGTTCAAAGGAAAAATTGAGAAGGTCGGCATGCTCT    100
                     |||.|.|.||||||||||.|||||||||||||||||||||||.|||||.|
RBAM_011300__     51 ATGCGCACAAACTCCGTTTAAAGGAAAAATTGAGAAGGTCGGAATGCTTT    100

BSNT_01894___    101 TTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGA    150
                     ||||.|||||.||.|.||||.|.|||||||||||||||||.||.|||||.
RBAM_011300__    101 TTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGT    150

BSNT_01894___    151 TTACTGAATATACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGG    200
                     |||.|....||||||||..|||..||.||.|||||.||||||||||||..
RBAM_011300__    151 TTATTAGCGATACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAA    200

BSNT_01894___    201 CGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGATTTTCATAAGA    250
                     ..|.|.|.|.||.||||||||..||||.|||||.||.|||||||||||.|
RBAM_011300__    201 TATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGATTTTCATAAAA    250

BSNT_01894___    251 GGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTT    300
                     ..||.||||||||..|.|||||.||.||.|.||||||.|..||..|.||.
RBAM_011300__    251 AAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTC    300

BSNT_01894___    301 AACTTGGTCGGCGAAGATTATCCAGATATGGAATTCGTCATTTCCAATGC    350
                     ||..||.||.||.|.||||||||.||.||||||||||||.|..|.||  |
RBAM_011300__    301 AATATGATCAGCAAGGATTATCCCGACATGGAATTCGTCGTCGCAAA--C    348

BSNT_01894___    351 GAAA--GCG-AAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAG    397
                     |.||  ||| ||||| ||||||||.||.||.||.|||.|||..||.||||
RBAM_011300__    349 GGAACGGCGAAAAGC-GATAATGTCACAAGCGTTCATCTTATGGGAGAAG    397

BSNT_01894___    398 CAATGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAAT    447
                     |||||||.|||||.||.||||||||.||.|||||||||||.|||||.|||
RBAM_011300__    398 CAATGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAAT    447

BSNT_01894___    448 CAGGTCGGTGTAATTGCTTCCTTTACGTGGCAGCCTGAGGTGGACGGTTT    497
                     .|||||||.||.||.||.||||||..||||||||||||.||.|||||.||
RBAM_011300__    448 GAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAGCCTGAAGTAGACGGCTT    497

BSNT_01894___    498 TATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAAT    547
                     ||||||||||||.||.||||||||.||.|||||....||.|||||..|||
RBAM_011300__    498 TATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAAT    547

BSNT_01894___    548 ATACGGATCATTGGGATGATGATACAACAGCAGTAAAG--------CTTT    589
                     .||||||.||.||||||        |||.|||.|.|||        ||||
RBAM_011300__    548 TTACGGACCACTGGGAT--------AACGGCAATGAAGCGCTGCATCTTT    589

BSNT_01894___    590 ATCAGAAAATGAAGAAC-GAAGGCGCGGATGTTGTGTATCCCGCCGGAGA    638
                     |..|| ||.|.||.|.| |||||..||||||||||.|||||.||||||||
RBAM_011300__    590 ACGAG-AAGTTAAAAGCGGAAGGTACGGATGTTGTATATCCGGCCGGAGA    638

BSNT_01894___    639 CGGGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATG    688
                     ||||||||||||.|||||.|||||||||||||||||||||||.|||||.|
RBAM_011300__    639 CGGGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACG    688

BSNT_01894___    689 CCATTGGCTACGTCACAGATCAATCGGATCTGGGCGAGAATACCGTATTA    738
                     ||||.|||||.|||.|.||.||||||.||||.|||.|.||.||.||..|.
RBAM_011300__    689 CCATCGGCTATGTCGCCGAGCAATCGAATCTCGGCAAAAACACGGTGCTG    738

BSNT_01894___    739 ACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACA    788
                     ||.||||||||||||||.||.||.||.||||||..|.|.|||||.||.||
RBAM_011300__    739 ACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCA    788

BSNT_01894___    789 ATTTAATAAAGGCACCCTTGAGGGCGGCGATCATTACTACGACCT----G    834
                     ||.|||||||||.||.||..||.||||.|||||..|||..||..|    |
RBAM_011300__    789 ATATAATAAAGGTACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGG    838

BSNT_01894___    835 AATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACAAAGA    884
                     ||    |||||||||||.|||||.||.||||||||.||.||.|||||||.
RBAM_011300__    839 AA----GGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACAAAGC    884

BSNT_01894___    885 CTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCG    934
                     .|||||..|.|.||||.|..|.||..|.|||||.||.|||..||||...|
RBAM_011300__    885 ATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATG    934

BSNT_01894___    935 AGCTGCCAAAAAACGAGTAA    954
                     |.|||||...|||.||.||.
RBAM_011300__    935 AACTGCCGTCAAATGAATAG    954


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01894 and RBAM_011300

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
