Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01892 and RBAM_011290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_01892.1.9828.seq
# -bsequence dna-align/RBAM_011290___yjaV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01892-RBAM_011290___yjaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01892-RBAM_011290___yjaV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01892
# 2: RBAM_011290___yjaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 385/616 (62.5%)
# Similarity: 385/616 (62.5%)
# Gaps: 107/616 (17.4%)
# Score: 1100.0
#
#
#=======================================
BSNT_01892 1 ATGGAATCAACGCTGATTGTAGGTGCGGACGAATTTTTCGGCCTTTCATT 50
|||.|..||.|||||||..|.||.||.|||||||||.|||||||||||||
RBAM_011290__ 1 ATGAAGACAGCGCTGATCATTGGAGCAGACGAATTTCTCGGCCTTTCATT 50
BSNT_01892 51 ATGTGAACGAATGATGGATGAAGGCATACATGTTGACGTTGTTCTGGCGG 100
.||.|||||..||||||||||.|||.|.||||||||.||..||.||||.|
RBAM_011290__ 51 GTGCGAACGGTTGATGGATGAGGGCGTGCATGTTGATGTCATTTTGGCAG 100
BSNT_01892 101 AAACAGAAGATAAAATGAGACAAATGTACTTAGAAGAAAGACTCATGTGG 150
||.|.||.||.||||.|||.||..||||.|||||||||.||.|.||||||
RBAM_011290__ 101 AACCGGAGGACAAAACGAGGCAGCTGTATTTAGAAGAACGATTAATGTGG 150
BSNT_01892 151 CTTGGGAGAAATGAACTCTTTCGCCAGCT------TGAACACATTGGAGA 194
||.|.||||||.|..||.||| ||..| |||| ||.||.|
RBAM_011290__ 151 CTCGCGAGAAACGGGCTTTTT---CAAATAATAGATGAA---ATCGGTG- 193
BSNT_01892 195 CCAAAATTATGATACAATTTGTATC------CAGTTCGGAA---GTTTTT 235
||||..| ||||.| |.||||| ||.|.|||.| |.|.|.
RBAM_011290__ 194 --AAAAGGA--ATACGA-TCGTATCTGCGTTCAATACGGGAGCGGGTGTC 238
BSNT_01892 236 TGCCTTTAGACCAATG--TGATTCTCCTTATATT---TTAGTATA---TG 277
|||||..||| ||.| |||..|| ||||||| || ||.|| ||
RBAM_011290__ 239 TGCCTGAAGA--AAGGGCTGAGCCT--TTATATTGGATT-GTTTACAGTG 283
BSNT_01892 278 AAGAAGACCGAAAAGAATGGGAAAAA---------CGTGAAAAAACAGGC 318
|.||..||.| |||.||||||||| ||.||.|
RBAM_011290__ 284 AGGATCACGG---AGACTGGGAAAAAAACGGTCAGCGGGATA-------- 322
BSNT_01892 319 TCGGAAAAAACCGTGATCCTGCCGAAAATGTATGGGCCATGGAAAGAAGA 368
|||.||||.|..|.|||||.||.....|.||.||.||.||||.|||||.
RBAM_011290__ 323 -CGGCAAAAGCGATTATCCTTCCTCCCCTTTACGGTCCGTGGACAGAAGC 371
BSNT_01892 369 AACAGAGGAAGACG---GC-------TATTACACAAACGACGT-----GG 403
||.|||.||.|.|| || |.|||.| |.|||..|| ||
RBAM_011290__ 372 AAAAGAAGATGGCGAAAGCAGGATCTTTTTAGA-AGACGCAGTCTGCGGG 420
BSNT_01892 404 CTGACGAGT-TGC-TGAGATTCCTGTTAGAACCAAGC---CGTCATAG-- 446
||||.||.| .|| |||| || ||.||.||
RBAM_011290__ 421 CTGATGAATCAGCTTGAG-----------------GCATACGGCACAGAA 453
BSNT_01892 447 --CAAAGATCAGCTTTTTGAATTGCAAGTCACAGAGAAAACCTCAAAAGA 494
|.||.|||||.||.||....||.||.|.|.||| ||||.|.||||| |
RBAM_011290__ 454 GACGAAAATCAGATTATTACCCTGGAAATAAAAGA-AAAAACGCAAAA-A 501
BSNT_01892 495 A--GAAGCAAAAACAAAAATTATCGAGTGGAAAAGACAATTTTCATCAAT 542
| |||||..||..||||||.|..||.|||||||||||||||||||||||
RBAM_011290__ 502 ACGGAAGCGGAAGAAAAAATCAAAGAATGGAAAAGACAATTTTCATCAAT 551
BSNT_01892 543 TTTCGACAAATATTAA 558
.|||||||..|.||||
RBAM_011290__ 552 ATTCGACATTTTTTAA 567
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