Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_01890 and RBAM_011280

See Amino acid alignment / Visit BSNT_01890 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_01890___yjaU.1.9828.seq
#    -bsequence dna-align/RBAM_011280___yjaU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01890___yjaU-RBAM_011280___yjaU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01890___yjaU-RBAM_011280___yjaU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01890___yjaU
# 2: RBAM_011280___yjaU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 759
# Identity:     539/759 (71.0%)
# Similarity:   539/759 (71.0%)
# Gaps:          48/759 ( 6.3%)
# Score: 1888.0
# 
#
#=======================================

BSNT_01890___      1 ATGGGAATAACGGAAAGATACTTTCAACTGGGAACGGAGCATAATGTCAT     50
                     |||||.||.||||||||||..||.|||.|.|||.|.||||..||.|||||
RBAM_011280__      1 ATGGGGATTACGGAAAGATTTTTCCAATTCGGATCTGAGCTGAACGTCAT     50

BSNT_01890___     51 TCATCTGCCCTATCGCCCGAACGGCTTCGGCATCTTTATCTTGGGGGACA    100
                     .||||||||.|||||.||||||||||||.|.||||||||..|||||||||
RBAM_011280__     51 CCATCTGCCGTATCGGCCGAACGGCTTCTGTATCTTTATTCTGGGGGACA    100

BSNT_01890___    101 GAACCCACTTTGTCGGACATGATTCAAGCTTTTGGCAGCAGCATTATGGC    150
                     .|||||||||||||.|.|..||.|||||||||||||...|.|||.|.||.
RBAM_011280__    101 AAACCCACTTTGTCAGCCGGGACTCAAGCTTTTGGCTCGAACATGAGGGG    150

BSNT_01890___    151 AGAAATCAGCTTCTGAGCATGTT------GAGGAATGA---AGGATACAC    191
                     |||||.||||         ||||      ||.|..|||   |||.|||||
RBAM_011280__    151 AGAAACCAGC---------TGTTAAATACGATGCTTGACAGAGGGTACAC    191

BSNT_01890___    192 TCTTTTTAACAGCAATCTGTTCGGAAGGCATTGGGGGGCGGAAAAAGCAG    241
                     ..||||||||||||||.|.|.||||.||||||||||..||||||||||.|
RBAM_011280__    192 CATTTTTAACAGCAATTTATACGGACGGCATTGGGGTTCGGAAAAAGCCG    241

BSNT_01890___    242 TCACCTATGCCAAACAGCTGATACATTCTGTGCTGAAGCAGGAAATCCTC    291
                     ||...||.||||.|||||||||.||||.|||||||||.||.||||.||||
RBAM_011280__    242 TCCTTTACGCCAGACAGCTGATTCATTATGTGCTGAAACAAGAAACCCTC    291

BSNT_01890___    292 AATCCGAAGATTCATATTTTAGCAGAAGGCATGGGTGCTCTCGTGGCCGA    341
                     ||||||||.||.||..|..|.||||||||||||||.||.||..|.|||||
RBAM_011280__    292 AATCCGAAAATACACTTGCTCGCAGAAGGCATGGGCGCCCTTATCGCCGA    341

BSNT_01890___    342 TGAACTGCTTCGTTTTTCCCCGGATCATATCCGCTCAGCCGCAATGTTGA    391
                     |.||.||||.|..|.|||..||||.||||||||.||||||||||||||..
RBAM_011280__    342 TCAATTGCTGCAGTCTTCAGCGGAGCATATCCGTTCAGCCGCAATGTTAG    391

BSNT_01890___    392 ATCCTTGTCTCGATCTTCAGGCACATTATGAATCGGAAAAAGAAAATAAA    441
                     ||||||||||.||.|||||.||.||||.||||||.||.|||||||||||.
RBAM_011280__    392 ATCCTTGTCTTGACCTTCAAGCCCATTTTGAATCAGAGAAAGAAAATAAG    441

BSNT_01890___    442 TTTTTCTATAAGCAATTTTTGAAAGAAGTTTCGAAAAGCTACGGAATTTC    491
                     |||||.||||||||.|||.|||..|||....|..|.||||.|||..||||
RBAM_011280__    442 TTTTTTTATAAGCAGTTTCTGAGGGAAACGGCACAGAGCTTCGGTGTTTC    491

BSNT_01890___    492 TGAAAAAGAAGCGGAAG--CGCTTCGTTATAAAACAATTCAAAGCTACCC    539
                     |||||||||.||  |||  |.||..|.|||.|.||.|||....|||.||.
RBAM_011280__    492 TGAAAAAGAGGC--AAGCTCACTGAGCTATCAGACCATTACCGGCTGCCG    539

BSNT_01890___    540 GAGCGGCGTACCGGTTCATATATGGCAGCGTATGACCGGAGCTCCATATC    589
                     .|.|.|.||.|||||.|||||||||||..|.|.|||||||||.||.||.|
RBAM_011280__    540 CACCCGTGTGCCGGTACATATATGGCAAAGAACGACCGGAGCGCCGTACC    589

BSNT_01890___    590 CCTACAGCGTACATGCG------------GAAGTTTTCAAGGAAAAACAG    627
                     |.||||.|.|.||||||            ||||    |..||.||||.|.
RBAM_011280__    590 CGTACACCCTGCATGCGAACGCGTATAAAGAAG----CCCGGGAAAAGAC    635

BSNT_01890___    628 CAAAAGCAAGGCTCACCGGTCGACATGACATTTCATTTATTTGAGCATCC    677
                     |..|||||||.||        ||.||.||.|.|||..|..||||| |.||
RBAM_011280__    636 CGGAAGCAAGACT--------GATATCACGTATCACCTGCTTGAG-AACC    676

BSNT_01890___    678 AAGC-AGAATTTATGCATCAATTTGCAAATTCTTTCACAGTCATGAAAAA    726
                     ..|| .|.||.||...|.|.||.|||...||.||.|.|||||||||||||
RBAM_011280__    677 CTGCGCGTATGTACAGAGCCATCTGCCGGTTTTTCCGCAGTCATGAAAAA    726

BSNT_01890___    727 GAATTATAG    735
                     ||..|.||.
RBAM_011280__    727 GACCTGTAA    735


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01890 and RBAM_011280

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
