Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01889 and RBAM_011270

See Amino acid alignment / Visit BSNT_01889 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_01889___yjzD.1.9828.seq
#    -bsequence dna-align/RBAM_011270___yjzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01889___yjzD-RBAM_011270___yjzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01889___yjzD-RBAM_011270___yjzD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01889___yjzD
# 2: RBAM_011270___yjzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 190
# Identity:     143/190 (75.3%)
# Similarity:   143/190 (75.3%)
# Gaps:           8/190 ( 4.2%)
# Score: 536.0
# 
#
#=======================================

BSNT_01889___      1 GTGCGATATATTATTGCCTTTATTTGGACGTTCCTTTTATCACATATGGC     50
                     |||||.|.||||||.|..|||||||||||||||||||||.||||||||||
RBAM_011270__      1 GTGCGGTTTATTATCGGTTTTATTTGGACGTTCCTTTTAACACATATGGC     50

BSNT_01889___     51 ATGCTACTTGGTTGCAAGCATGAACAGCGTTACGTATAATTTCAAAACAT    100
                     .||.||.|||||.||...|||||||||||...||||.||||||||...||
RBAM_011270__     51 CTGTTATTTGGTCGCCTCCATGAACAGCGCGGCGTACAATTTCAAGCAAT    100

BSNT_01889___    101 CATCTGTCATTGCTGTTGTACTGTAT----GTCTTAATCATGGTTTTAGC    146
                     ||||.||.|||||.||.||    |||    ||..||.||.|.|||.|.||
RBAM_011270__    101 CATCCGTTATTGCCGTGGT----TATTGCGGTGCTAGTCTTTGTTCTTGC    146

BSNT_01889___    147 AGAAATCATGCCTATGAACAAAAATGCAAGCCAGCATTAA    186
                     .||.|||||||||.|.||..|..|||||||||||||||||
RBAM_011270__    147 GGAGATCATGCCTGTCAAACAGGATGCAAGCCAGCATTAA    186


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