Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01885 and RBAM_011250
See
Amino acid alignment /
Visit
BSNT_01885 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_01885___argF.1.9828.seq
# -bsequence dna-align/RBAM_011250___argF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01885___argF-RBAM_011250___argF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01885___argF-RBAM_011250___argF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01885___argF
# 2: RBAM_011250___argF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 725/1013 (71.6%)
# Similarity: 725/1013 (71.6%)
# Gaps: 94/1013 ( 9.3%)
# Score: 2564.5
#
#
#=======================================
BSNT_01885___ 1 ATGCACACAGT----------GACGCA--AACCAGTTTATACGGAAAAGA 38
|||||||||.| .||.|| ||||..|||.|||||.|||||
RBAM_011250__ 1 ATGCACACAATAAAAGCGGAACACACATTAACCCATTTGTACGGCAAAGA 50
BSNT_01885___ 39 TTTATTAACGTTAAAGGACCTTA----GTGAAGAGGATATAAACGC-CTT 83
|||..|..|.|||||.||..|.| ||.| ||.||.||.|| |||
RBAM_011250__ 51 TTTTCTTTCCTTAAAAGATGTCAGCCCGTCA----GACATCAATGCGCTT 96
BSNT_01885___ 84 GCTCGCAGAAGCCGGTGAGCTGA--AACAAAACAA-----AATTCAGCCT 126
||..||||||| .|.| |..||||||| .||.|||||.
RBAM_011250__ 97 -CTGACAGAAGC-------TTCATTATTAAAACAACATCCGATACAGCCG 138
BSNT_01885___ 127 ATATTCCATGGCAAAACCTTGGCGATGATTTTTGAAAAATCATCAACGCG 176
||.|||||.||.|||||.|||||||||||||||||||||||.|||||.||
RBAM_011250__ 139 ATTTTCCAAGGGAAAACATTGGCGATGATTTTTGAAAAATCTTCAACCCG 188
BSNT_01885___ 177 GACACGTGTTTCTTTTGAAGCGGGCATGGCACAGCTTGGCGGGAAC-GCC 225
.||||||||.||||||||||||||.|||||.|||||.|| |||||| |..
RBAM_011250__ 189 CACACGTGTGTCTTTTGAAGCGGGAATGGCCCAGCTCGG-GGGAACGGGA 237
BSNT_01885___ 226 CTCTTTCT---AAGCCAGAAAGATCTGCAGCTGGGGCGCGGTGAGACTGT 272
||.||||| |||| |..||.||||||||.|||||.||.|||||.||
RBAM_011250__ 238 CTATTTCTTTCAAGC---AGCGACCTGCAGCTTGGGCGGGGGGAGACAGT 284
BSNT_01885___ 273 CGCTGATACGGCAAAAGTGCTGTCAGGCTATGTGGATGCCATCATGATCC 322
|||.||||||||.||.||||||||.||||..||.||||||||.|||||||
RBAM_011250__ 285 CGCGGATACGGCGAAGGTGCTGTCCGGCTTCGTTGATGCCATTATGATCC 334
BSNT_01885___ 323 GGACCTTTGAACATGAAAAGGTGGAGGAACTTGCCAAAGAAGCTGACATT 372
|.||||||||.||||||||.||.||.||.||||||.|..|.||.||||||
RBAM_011250__ 335 GCACCTTTGAGCATGAAAAAGTCGAAGAGCTTGCCGAGCATGCAGACATT 384
BSNT_01885___ 373 CCGGTGATCAATGGACTTACTGATAAATACCACCCATGCCAGGCGCTGGC 422
||.||.||.||.||.||.||.||....||.|||||.||.|||||.||.||
RBAM_011250__ 385 CCCGTCATAAACGGGCTGACCGACCGGTATCACCCGTGTCAGGCACTCGC 434
BSNT_01885___ 423 GGATCTCTTGACGATTAAGGAGATAAAAGGGAAGCTTAAAGGCGTAAAAG 472
||||||.||.|||||..|.||.||||||||.||..|.|||||.|||||||
RBAM_011250__ 435 GGATCTGTTAACGATACAAGAAATAAAAGGAAAATTAAAAGGAGTAAAAG 484
BSNT_01885___ 473 TCTCATACATCGGTGACGGAAATAACGTGGCGCACTCCTTGATGATCGGC 522
.|.|.||.|||||||||||||||||.||.|||||.||..|.|||||.|||
RBAM_011250__ 485 CCGCCTATATCGGTGACGGAAATAATGTAGCGCATTCACTAATGATTGGC 534
BSNT_01885___ 523 TGCGCGAAAATGGGCTGTGATATCTCGATCGCTTCGCCAAAGGGATATGA 572
|||||.||||||||||||||.||..||||.||||||||.||.||.|||||
RBAM_011250__ 535 TGCGCAAAAATGGGCTGTGACATTGCGATTGCTTCGCCGAAAGGCTATGA 584
BSNT_01885___ 573 AGTGTTAGATGAAGCAGCTGAAGCGGCAAAAACATATGCACTTC------ 616
|| ||||.||| ||.||||.|| |||| |
RBAM_011250__ 585 AG---TAGAGGAA------GAGGCGGTAA------ATGC----CGCGAAA 615
BSNT_01885___ 617 -AATC--CGGCTCTTCT-----------ATCACGCTGACAGATGATCCGA 652
||.| |||||.|| | |||||.||.||.||..|||||.
RBAM_011250__ 616 GAAGCGGCGGCTGTT-TCCGGAGCGAAAATCACCCTTACCGAAAATCCGC 664
BSNT_01885___ 653 TTGAAGCTGTAAAAGACGCGGACGTAATTTATTCTGATGTGTTTACAAGC 702
..|||||.||....||.||.|||||.|||||.||.||.||.||.||.|||
RBAM_011250__ 665 AGGAAGCGGTGCGGGATGCAGACGTGATTTACTCCGACGTCTTCACGAGC 714
BSNT_01885___ 703 ATGGGGCAGGAAGCGGAAGA---GCAAGAACGTCTTGCTGTCTTTGCGCC 749
||||||||||| |||||| |||..|.||.||...|||.|||||.||
RBAM_011250__ 715 ATGGGGCAGGA---GGAAGAGACGCAGCAGCGGCTGAATGTGTTTGCCCC 761
BSNT_01885___ 750 TTATCAGGTGAATGCGGCGCTTGTCAGCCATGCCAAGCCTGACTATACAT 799
.|||||.||.||.||..|.||.|||||.|..|||||.||.||||||||||
RBAM_011250__ 762 GTATCAAGTCAACGCCTCACTCGTCAGTCTCGCCAAACCCGACTATACAT 811
BSNT_01885___ 800 TTTTACATTGTCTCCCTGCGCATCGTGAGGAAGAAGTGACTGCGGAGATT 849
||||.|||||.||.||.||||||||.||.|||||.||.||..|.||||||
RBAM_011250__ 812 TTTTGCATTGCCTGCCCGCGCATCGGGAAGAAGAGGTCACGTCCGAGATT 861
BSNT_01885___ 850 ATTGACGGGCCGAACTCTGCAGTGTTCCAGCAGGCGGAAAACCGTCTTCA 899
||.|||||.|||||||||||.||.||.|||||||||||||||||.|||||
RBAM_011250__ 862 ATCGACGGCCCGAACTCTGCGGTATTTCAGCAGGCGGAAAACCGGCTTCA 911
BSNT_01885___ 900 TGTGCAAAAAGCACTGCTGAAGGCCATTTTATACAAAGGGGA--ATCATC 947
.|.|||||||||.||.|||||.||..||.|.||||||..||| |.||
RBAM_011250__ 912 CGCGCAAAAAGCGCTCCTGAAAGCTCTTCTTTACAAACAGGATGAACA-- 959
BSNT_01885___ 948 AAAAAACTGCTGA 960
|||||||.|||||
RBAM_011250__ 960 AAAAAACCGCTGA 972
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.