Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01870 and RBAM_011140

See Amino acid alignment / Visit BSNT_01870 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01870___yitV.1.9828.seq
#    -bsequence dna-align/RBAM_011140___yitV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01870___yitV-RBAM_011140___yitV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01870___yitV-RBAM_011140___yitV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01870___yitV
# 2: RBAM_011140___yitV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 799
# Identity:     574/799 (71.8%)
# Similarity:   574/799 (71.8%)
# Gaps:          62/799 ( 7.8%)
# Score: 2044.5
# 
#
#=======================================

BSNT_01870___      1 GTGATACAAATTGAGAATCAAACCGTTTCCGGTATTCCGTTTTTACATAT     50
                     |||||.|..|||||..||||||||||.||.||.|||||||||||||||||
RBAM_011140__      1 GTGATTCTTATTGATCATCAAACCGTATCAGGCATTCCGTTTTTACATAT     50

BSNT_01870___     51 TGTAAAGGAAGAGAACAGGCACCGCGCTGTTCCTCTCGTGATCTTTATCC    100
                     ||||||.|||||.||..||.||||..|.|.|||.||.||..|||||||.|
RBAM_011140__     51 TGTAAAAGAAGAAAATCGGGACCGTCCCGCTCCCCTTGTTTTCTTTATTC    100

BSNT_01870___    101 ATGGTTTTACAAGCGCGAAGGAACACAATCTTCATATTGCTTATCTGCTT    150
                     |.||||||||||||||||||||.||.|||||||||.|.|||||.||||||
RBAM_011140__    101 ACGGTTTTACAAGCGCGAAGGAGCATAATCTTCATTTCGCTTACCTGCTT    150

BSNT_01870___    151 GCGGAGAAGGGTTTTAGAGCCGTTCTGCCGGAGGCTTTGCACCATGGGGA    200
                     ||.||.|||||.||.||||||||.||||||||.|||.|..||||.||.||
RBAM_011140__    151 GCTGAAAAGGGCTTCAGAGCCGTGCTGCCGGAAGCTCTTTACCACGGTGA    200

BSNT_01870___    201 ACGGGGAGAAGAAATGGCTGTC----GAAGAGCTGGCGGGGCATTTTTGG    246
                     |||.|..|||.|    ||||||    ||||||||.||.|..|||||||||
RBAM_011140__    201 ACGCGCTGAACA----GCTGTCAGCAGAAGAGCTCGCCGTCCATTTTTGG    246

BSNT_01870___    247 GATATCGTCCTTAACGAGATTGAAGAGATCGGCGTACTTAAAAACCTTTT    296
                     |||||.||..|.||.||.||.||.|||.|.|.|||.||.|||||...|||
RBAM_011140__    247 GATATTGTATTAAATGAAATCGAGGAGCTTGACGTGCTGAAAAAGGATTT    296

BSNT_01870___    297 TGAAAAAGAGGGC---CTGATAGACGGCGGCCGCATCGGTCTCGCAGGCA    343
                     ||   |||.|.||   |||||.||.|.|||.||.||||||||.||.||||
RBAM_011140__    297 TG---AAGCGCGCAGTCTGATTGAAGACGGGCGGATCGGTCTTGCGGGCA    343

BSNT_01870___    344 CGTCAATGGGCGGCATCACAACGCTTGGCGCTTTGACTGCATATGATTGG    393
                     |||||||||||||.||.||.||..|.|||||..||.|.||.|||||||||
RBAM_011140__    344 CGTCAATGGGCGGAATTACTACATTCGGCGCGATGGCCGCGTATGATTGG    393

BSNT_01870___    394 ATAAAAGCCGGCGTCAGCCTGATGGGAAGCCCGAATTA-----CGTGGAA    438
                     .|.||||||||||||||.|||||||||||||||||.||     |||    
RBAM_011140__    394 GTCAAAGCCGGCGTCAGTCTGATGGGAAGCCCGAACTATACGGCGT----    439

BSNT_01870___    439 CTGTTTCAGCAGCAGATTGACCATATTCAATCTCAGGGCATTGAAATTGA    488
                      |.||||||||||||||||||||.||||||...||||.|||.||.|||||
RBAM_011140__    440 -TTTTTCAGCAGCAGATTGACCACATTCAAAAGCAGGACATCGACATTGA    488

BSNT_01870___    489 TGTGCCGGAAGAGAAGGTACAGCAGCT-GATGAA--------ACGTCTCG    529
                     .||  |..||.||||       |||.| ||||||        .||.|||.
RBAM_011140__    489 CGT--CACAAAAGAA-------CAGGTCGATGAACTGTTTGCGCGGCTCA    529

BSNT_01870___    530 AATTGCGGGATCTCAGCCTTCAGCCGGAGAAACT--GCAACAGCGCCCGC    577
                     ||..|...||||||||.||..|.|||||.|||||  |||.|  |||||||
RBAM_011140__    530 AACCGTTCGATCTCAGTCTGGAACCGGAAAAACTCCGCAGC--CGCCCGC    577

BSNT_01870___    578 TTTTATTTTGGCACGGCGCAAAAGATAAGGTCGTGCCTTACGCGCCGACC    627
                     |..|.||.||||||||||...||||.||.|||||.||.||.||.||||||
RBAM_011140__    578 TGCTGTTCTGGCACGGCGTTCAAGACAAAGTCGTTCCGTATGCACCGACC    627

BSNT_01870___    628 CGGAAATTTTATGACACGATCAAATCCCATTACAGCGAGCAGCCGGAACG    677
                     ||....||||||||.|||||.|||.|.||||||    ||||||||    |
RBAM_011140__    628 CGCGGCTTTTATGAAACGATTAAACCTCATTAC----AGCAGCCG----G    669

BSNT_01870___    678 CCTG--------CAATTTATCGGAGATGAAAACGCTGACCATAAAGTCCC    719
                     ||||        ||.|||.|...|||.|||...|||||.|||||||||||
RBAM_011140__    670 CCTGACCATCTTCAGTTTCTGAAAGACGAACGGGCTGATCATAAAGTCCC    719

BSNT_01870___    720 GCGGGCAGCTGTGTTAAAAACGATTGAATGGTTTGAAACGTACTTATAA    768
                     |.|....||.||.|||.||||..|.|..|||||.||.|.|.|.||||||
RBAM_011140__    720 GAGATACGCCGTTTTAGAAACCGTCGCCTGGTTCGATAAGCATTTATAA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01870 and RBAM_011140

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
