Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01862 and RBAM_011040

See Amino acid alignment / Visit BSNT_01862 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01862___yitL.1.9828.seq
#    -bsequence dna-align/RBAM_011040___yitL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01862___yitL-RBAM_011040___yitL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01862___yitL-RBAM_011040___yitL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01862___yitL
# 2: RBAM_011040___yitL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 852
# Identity:     680/852 (79.8%)
# Similarity:   680/852 (79.8%)
# Gaps:           6/852 ( 0.7%)
# Score: 2695.0
# 
#
#=======================================

BSNT_01862___      1 ATGAGACCAGGGCAGCAATTAAC-CTTGAGTATAGATCACCAAACCGACT     49
                     |||||||||||||||||..|.|| ||| ||||||||||||||||||||.|
RBAM_011040__      1 ATGAGACCAGGGCAGCAGCTCACGCTT-AGTATAGATCACCAAACCGATT     49

BSNT_01862___     50 TCGGTTACTTTTTAACCGATGGGGAAGATACGATTCTCTTACATAACAGT     99
                     |||||||.|||||||||||.||.||.||||||.||||.||||||||||||
RBAM_011040__     50 TCGGTTATTTTTTAACCGACGGCGAGGATACGGTTCTTTTACATAACAGT     99

BSNT_01862___    100 GAAATGACTGAGGATATCGGGGACAGAGACGAAGTAGAAGTCTTTATATA    149
                     |||||.||.||||||||||..||||||||.|||||.||.||.|||||.||
RBAM_011040__    100 GAAATCACAGAGGATATCGAAGACAGAGATGAAGTGGACGTATTTATTTA    149

BSNT_01862___    150 CGTCGACCAGCAGGAAAGGCTTGCGGCCACGATGAAAATTCCGGTCATCA    199
                     ||||||.||.||||||||.||.||.||.||||||||||..|||.||||||
RBAM_011040__    150 CGTCGATCATCAGGAAAGACTCGCAGCGACGATGAAAAAGCCGCTCATCA    199

BSNT_01862___    200 GCGCGGATGAATATGGCTGGGTTGAAGTGGTGGATAAAGTGGAAGATATG    249
                     ||....||||.||.||.|||||.||||||..|||....||||||||||||
RBAM_011040__    200 GCTTTTATGACTACGGATGGGTGGAAGTGACGGACGCTGTGGAAGATATG    249

BSNT_01862___    250 GGCGTTTTCGTTGATGTCGGTTTATCGAAGGACGCACTAGTCGCAACTGA    299
                     |||||.|||||.||.||||||.|.||.||.|||||.||.||||||||.||
RBAM_011040__    250 GGCGTATTCGTCGACGTCGGTCTGTCAAAAGACGCGCTCGTCGCAACGGA    299

BSNT_01862___    300 GCATTTGCCGCCGTATGAAGATGTCTGGCCGCAAAAAGGGGACAAACTTT    349
                     |||..||||.|||||..||...||||||||.||||||||.||||.|||.|
RBAM_011040__    300 GCACCTGCCTCCGTACAAATCCGTCTGGCCTCAAAAAGGAGACAGACTGT    349

BSNT_01862___    350 ACTGTATGCTGAAGGTGACGAACCGGGGGCGCATGTTTGCGAAACCAGCG    399
                     |.||.||||||||||||||.|.|||.||||||||||||||.||.||.|||
RBAM_011040__    350 ATTGCATGCTGAAGGTGACAAGCCGCGGGCGCATGTTTGCCAAGCCGGCG    399

BSNT_01862___    400 CCGGAAGATATCATCAGCGAACTGTTTACCGACGCTTCAGAAGATCTGAT    449
                     ||.||.|||||||||||.|||.|.|||||.||.||....|||||..|.||
RBAM_011040__    400 CCCGAGGATATCATCAGTGAATTATTTACGGATGCAGAGGAAGACGTCAT    449

BSNT_01862___    450 GAATAAAGAGCTGACAGGTACGGTGTACAGGCTGATCGCATCGGGTTCAT    499
                     |||||||||.|||||.||||||||||||||.|||||.|||||.||.||.|
RBAM_011040__    450 GAATAAAGACCTGACGGGTACGGTGTACAGACTGATTGCATCAGGCTCTT    499

BSNT_01862___    500 TCGTGATCACGGATGACGGTATCCGCTGTTTTATTCACCCGTCAGAAAGA    549
                     |..||||.||.|||||.||.||.|||...|||||||||||.|||||||||
RBAM_011040__    500 TTCTGATTACCGATGAAGGCATTCGCGCGTTTATTCACCCTTCAGAAAGA    549

BSNT_01862___    550 AAAGAGGAGCCAAGACTGGGTTCA--AAAGTCACAGGCCGGGTGATTCAA    597
                     |||||.|||||.|||||.||  ||  ...||.|||||.||.||.||..|.
RBAM_011040__    550 AAAGAAGAGCCGAGACTCGG--CAGCCGCGTGACAGGGCGTGTCATCGAG    597

BSNT_01862___    598 GTGAAAGAAGACGGTTCAGTCAACTTGTCGCTGCTTCCGAGAAAACAGGA    647
                     |||||.||||||||.||.||||||.||||.|||||.||||||||.|||||
RBAM_011040__    598 GTGAAGGAAGACGGCTCCGTCAACATGTCCCTGCTGCCGAGAAAGCAGGA    647

BSNT_01862___    648 TGCAATGTCTGTTGATGCTGAGTGCATTCTAACGTATATGAGAATGAGAA    697
                     |||..|.||.|||||.||.||....|||||.||.|||.|||||...||||
RBAM_011040__    648 TGCGCTTTCGGTTGACGCGGAAGAAATTCTGACCTATCTGAGATCAAGAA    697

BSNT_01862___    698 ACGGTGCCATGCCGTACAGTGACAAAAGCCAGCCTGACGATATCAGAGAA    747
                     ||||.||.|||||.|||.|.|||||||||||.||||||||||||.|.|||
RBAM_011040__    698 ACGGCGCGATGCCTTACGGAGACAAAAGCCATCCTGACGATATCCGCGAA    747

BSNT_01862___    748 CGTTTTAATATGAGCAAAGCCGCCTTTAAACGCGCGCTGGGCCATTTGAT    797
                     ||.|||.||.|.|||||||||||||||||.||.|||||.||.|||.||||
RBAM_011040__    748 CGGTTTCATTTAAGCAAAGCCGCCTTTAAGCGGGCGCTCGGGCATCTGAT    797

BSNT_01862___    798 GAAAAACGGAAAAGTGTATCAGGAAAATGGATGGACATACGAGAAAAAAT    847
                     |||||||||.||.||.|||||||||.|.||.|||||||||||.|||.|||
RBAM_011040__    798 GAAAAACGGCAAGGTCTATCAGGAAGACGGCTGGACATACGAAAAACAAT    847

BSNT_01862___    848 AG    849
                     |.
RBAM_011040__    848 AA    849


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