Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01838 and RBAM_010940
See
Amino acid alignment /
Visit
BSNT_01838 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_01838___yisN.1.9828.seq
# -bsequence dna-align/RBAM_010940___yisN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01838___yisN-RBAM_010940___yisN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01838___yisN-RBAM_010940___yisN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01838___yisN
# 2: RBAM_010940___yisN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 649
# Identity: 384/649 (59.2%)
# Similarity: 384/649 (59.2%)
# Gaps: 149/649 (23.0%)
# Score: 1101.5
#
#
#=======================================
BSNT_01838___ 1 ------------------------------------------------AT 2
||
RBAM_010940__ 1 TTGGAAAGAACGGAAGAGAAGAAACAAACAAAGGAGACCGGCACGGTTAT 50
BSNT_01838___ 3 GAAACGGAAACAATTGTTATATACAGAGGAACGAAAATGGGAATACGGCA 52
||||||.|||||..|.||.| ||||..||...|||||||....|||||
RBAM_010940__ 51 GAAACGAAAACAGCTTTTCT---CAGAAAAAAACAAATGGGGTCGCGGCA 97
BSNT_01838___ 53 CCATCCTCATCGAAGACGGCGTCTGTTTAATCGAAAACGGAGAAGGTGAT 102
||.|..|.||.||.||||||.||||..|..|||||||||..|||||.|||
RBAM_010940__ 98 CCCTGATGATAGAGGACGGCATCTGCCTCGTCGAAAACGATGAAGGCGAT 147
BSNT_01838___ 103 ATACTTTTGGCGGACACTCT--CCAACACAGCCCAATCTGGGTCCATCAT 150
||.||..||||.||||.||| ..|||.|||.| || ||
RBAM_010940__ 148 ATCCTGCTGGCAGACAGTCTAGGAAACGCAGAC--------GT-----AT 184
BSNT_01838___ 151 AAAGGAAA-GTGGGAGCA------AGCCGGCTTCCA-GGATCAATT---- 188
..|.|||| |.||..||| |||||| || |||| ||
RBAM_010940__ 185 TGATGAAACGCGGCGGCAGATGGCAGCCGG----CACGGAT---TTGCGG 227
BSNT_01838___ 189 -GGTTCTGGC----ATGCGGTGAAGAAAACATCTCCCT-TTC--CGGGGG 230
|||.| ||| || |||...|||.|.||||.|||| .|| |||||.
RBAM_010940__ 228 CGGTGC-GGCCGAAAT-CGGCACAGACACCATCCCCCTGCTCGGCGGGGA 275
BSNT_01838___ 231 AGAACGCATCCGCTATGAGAAATCAGTCAAGCGGCCGCT-----CATGGC 275
|||| |||||.|||||.||..|.||.||.|||||||| |.|.||
RBAM_010940__ 276 AGAA---ATCCGTTATGAAAAGGCGGTAAAACGGCCGCTGTTAACCTTGC 322
BSNT_01838___ 276 GCTTTTGGATTCGCTTGACGACGAAACCTTTCTCGC-ATTTCTGCAGC-- 322
|.||||||||.|||||.|||||.||||| || .||||| ||||
RBAM_010940__ 323 -----TCGATTCGCTGGACGATGAAACGTTTCT-GCTGTTTCT-CAGCCA 365
BSNT_01838___ 323 ACTTGCACAGCTTCGGCTTATCGGTATTCGATTGCGTCTTTTCTTATAAT 372
.||| |||.|.||||||.|.||.||||..||||||||.|||||.||.|||
RBAM_010940__ 366 TCTT-CACGGGTTCGGCCTGTCTGTATATGATTGCGTATTTTCCTACAAT 414
BSNT_01838___ 373 AAAGGAG-TCTTTTCGAATACTTCGGCGGGGCAG----GGTGTGTCCTTT 417
.|||.| |.||||| ||| ||.||.||.|||
RBAM_010940__ 415 -CAGGCGCTGTTTTC----------------CAGTGAAGGCGTTTCGTTT 447
BSNT_01838___ 418 TATCACTTTT---CAAATGACACCGCACAATGCGCGATGCAGCATCACTA 464
||||||||.| |..|||| .|||||||||||..|||||||||||..
RBAM_010940__ 448 TATCACTTCTCGGCGGATGA---AGCACAATGCGCCCTGCAGCATCACCG 494
BSNT_01838___ 465 CAGCAACGAAGGGACAGGAGACCGTTTTGAATGGACGGCTTCAAACGGAA 514
|.|||.|...||.|.|...|||.|.||||||||||||||.||..||||..
RBAM_010940__ 495 CGGCAGCTCGGGCAAACACGACAGATTTGAATGGACGGCATCTGACGGGC 544
BSNT_01838___ 515 AGCGATCCATTATGTATTCAGC----AGTCCA-ACGGGGGCGCAAATAA 558
.|||.||||||||||||||||| ||.|.| ||||...||| .|||
RBAM_010940__ 545 GGCGCTCCATTATGTATTCAGCGGCAAGACAAGACGGCACCGC--GTAA 591
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.