Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01838 and RBAM_010940

See Amino acid alignment / Visit BSNT_01838 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_01838___yisN.1.9828.seq
#    -bsequence dna-align/RBAM_010940___yisN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01838___yisN-RBAM_010940___yisN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01838___yisN-RBAM_010940___yisN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01838___yisN
# 2: RBAM_010940___yisN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 649
# Identity:     384/649 (59.2%)
# Similarity:   384/649 (59.2%)
# Gaps:         149/649 (23.0%)
# Score: 1101.5
# 
#
#=======================================

BSNT_01838___      1 ------------------------------------------------AT      2
                                                                     ||
RBAM_010940__      1 TTGGAAAGAACGGAAGAGAAGAAACAAACAAAGGAGACCGGCACGGTTAT     50

BSNT_01838___      3 GAAACGGAAACAATTGTTATATACAGAGGAACGAAAATGGGAATACGGCA     52
                     ||||||.|||||..|.||.|   ||||..||...|||||||....|||||
RBAM_010940__     51 GAAACGAAAACAGCTTTTCT---CAGAAAAAAACAAATGGGGTCGCGGCA     97

BSNT_01838___     53 CCATCCTCATCGAAGACGGCGTCTGTTTAATCGAAAACGGAGAAGGTGAT    102
                     ||.|..|.||.||.||||||.||||..|..|||||||||..|||||.|||
RBAM_010940__     98 CCCTGATGATAGAGGACGGCATCTGCCTCGTCGAAAACGATGAAGGCGAT    147

BSNT_01838___    103 ATACTTTTGGCGGACACTCT--CCAACACAGCCCAATCTGGGTCCATCAT    150
                     ||.||..||||.||||.|||  ..|||.|||.|        ||     ||
RBAM_010940__    148 ATCCTGCTGGCAGACAGTCTAGGAAACGCAGAC--------GT-----AT    184

BSNT_01838___    151 AAAGGAAA-GTGGGAGCA------AGCCGGCTTCCA-GGATCAATT----    188
                     ..|.|||| |.||..|||      ||||||    || ||||   ||    
RBAM_010940__    185 TGATGAAACGCGGCGGCAGATGGCAGCCGG----CACGGAT---TTGCGG    227

BSNT_01838___    189 -GGTTCTGGC----ATGCGGTGAAGAAAACATCTCCCT-TTC--CGGGGG    230
                      |||.| |||    || |||...|||.|.||||.|||| .||  |||||.
RBAM_010940__    228 CGGTGC-GGCCGAAAT-CGGCACAGACACCATCCCCCTGCTCGGCGGGGA    275

BSNT_01838___    231 AGAACGCATCCGCTATGAGAAATCAGTCAAGCGGCCGCT-----CATGGC    275
                     ||||   |||||.|||||.||..|.||.||.||||||||     |.|.||
RBAM_010940__    276 AGAA---ATCCGTTATGAAAAGGCGGTAAAACGGCCGCTGTTAACCTTGC    322

BSNT_01838___    276 GCTTTTGGATTCGCTTGACGACGAAACCTTTCTCGC-ATTTCTGCAGC--    322
                          |.||||||||.|||||.|||||.||||| || .||||| ||||  
RBAM_010940__    323 -----TCGATTCGCTGGACGATGAAACGTTTCT-GCTGTTTCT-CAGCCA    365

BSNT_01838___    323 ACTTGCACAGCTTCGGCTTATCGGTATTCGATTGCGTCTTTTCTTATAAT    372
                     .||| |||.|.||||||.|.||.||||..||||||||.|||||.||.|||
RBAM_010940__    366 TCTT-CACGGGTTCGGCCTGTCTGTATATGATTGCGTATTTTCCTACAAT    414

BSNT_01838___    373 AAAGGAG-TCTTTTCGAATACTTCGGCGGGGCAG----GGTGTGTCCTTT    417
                      .|||.| |.|||||                |||    ||.||.||.|||
RBAM_010940__    415 -CAGGCGCTGTTTTC----------------CAGTGAAGGCGTTTCGTTT    447

BSNT_01838___    418 TATCACTTTT---CAAATGACACCGCACAATGCGCGATGCAGCATCACTA    464
                     ||||||||.|   |..||||   .|||||||||||..|||||||||||..
RBAM_010940__    448 TATCACTTCTCGGCGGATGA---AGCACAATGCGCCCTGCAGCATCACCG    494

BSNT_01838___    465 CAGCAACGAAGGGACAGGAGACCGTTTTGAATGGACGGCTTCAAACGGAA    514
                     |.|||.|...||.|.|...|||.|.||||||||||||||.||..||||..
RBAM_010940__    495 CGGCAGCTCGGGCAAACACGACAGATTTGAATGGACGGCATCTGACGGGC    544

BSNT_01838___    515 AGCGATCCATTATGTATTCAGC----AGTCCA-ACGGGGGCGCAAATAA    558
                     .|||.|||||||||||||||||    ||.|.| ||||...|||  .|||
RBAM_010940__    545 GGCGCTCCATTATGTATTCAGCGGCAAGACAAGACGGCACCGC--GTAA    591


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