Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01825 and RBAM_010880

See Amino acid alignment / Visit BSNT_01825 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_01825___gerPB.1.9828.seq
#    -bsequence dna-align/RBAM_010880___gerPB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01825___gerPB-RBAM_010880___gerPB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01825___gerPB-RBAM_010880___gerPB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01825___gerPB
# 2: RBAM_010880___gerPB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     167/248 (67.3%)
# Similarity:   167/248 (67.3%)
# Gaps:          25/248 (10.1%)
# Score: 551.0
# 
#
#=======================================

BSNT_01825___      1 ATGAACTTCTATATTAATCAAACCATTCAAATCAACTATCTCCGGCTGGA     50
                     |||||.||.||..|.|||||..|.||.||.|||||.||..|.||..|.||
RBAM_010880__      1 ATGAATTTTTACGTCAATCAGTCGATCCATATCAATTACATGCGTGTAGA     50

BSNT_01825___     51 ATCAATCAGCAACTCCTCCATTCTGCAAATCGGGAGCGCCGGATCAATCA    100
                     |||..|||||||.||||||||.|||||||||||.||||||||.|||||.|
RBAM_010880__     51 ATCTGTCAGCAATTCCTCCATACTGCAAATCGGAAGCGCCGGTTCAATTA    100

BSNT_01825___    101 AGTCTTTGTCAAATTTGTATAATACAGGAAGCTATGTAGAACCGGCACCA    150
                     |.|||.|.||.|||.||||.||.|||||.||.|||||.||.|||||.|| 
RBAM_010880__    101 AATCTCTTTCCAATCTGTACAACACAGGGAGTTATGTTGAGCCGGCGCC-    149

BSNT_01825___    151 GAAGTTTCTGGC---TCA-----GGGCA----ACCGCTCCAGCTGCAGGA    188
                               ||   |||     |||||    ||.|...||.|.|..|||
RBAM_010880__    150 ----------GCCTGTCACCGCGGGGCAGCAGACTGTAACAACAGGGGGA    189

BSNT_01825___    189 G--CCCGACACAGGTTCATTGGTCCCGCTCCAGCCTCCTGGCCGTTAA    234
                     |  ||||.|||....|||||.||.|||||||||||.||..||||.||.
RBAM_010880__    190 GGTCCCGGCACCTCATCATTTGTACCGCTCCAGCCGCCAAGCCGGTAG    237


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