Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01817 and RBAM_010830

See Amino acid alignment / Visit BSNT_01817 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_01817___yisB.1.9828.seq
#    -bsequence dna-align/RBAM_010830___yisB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01817___yisB-RBAM_010830___yisB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01817___yisB-RBAM_010830___yisB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01817___yisB
# 2: RBAM_010830___yisB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity:     219/317 (69.1%)
# Similarity:   219/317 (69.1%)
# Gaps:          37/317 (11.7%)
# Score: 761.5
# 
#
#=======================================

BSNT_01817___      1 ATGGCAAAGCAGA--CTGCC---GGAATATGTGAGCTGTGCGGCCG-GAG     44
                     |||     ||.||  |||||   ||.|.||||||..|.|||||||| .|.
RBAM_010830__      1 ATG-----GCCGATTCTGCCGAGGGCACATGTGAATTATGCGGCCGCCAT     45

BSNT_01817___     45 CGATGTCCAGCTGACAGAGCATCATCTCACACCGAAAGAGGAAGGCGGAA     94
                     | ||||.|.||||||.|||||.||..|.||.||.||.||.||||||||.|
RBAM_010830__     46 C-ATGTGCGGCTGACGGAGCACCACTTAACGCCTAAGGAAGAAGGCGGGA     94

BSNT_01817___     95 CGTTTTTGCCGACAGCGATGCTCTGTATTCCTTGTCATAAACAGATTCAT    144
                     |.||..|.|||||.||.||||||||.||.|||||||||||||||.||||.
RBAM_010830__     95 CATTCCTTCCGACCGCAATGCTCTGCATCCCTTGTCATAAACAGGTTCAC    144

BSNT_01817___    145 GCCTTATATACCAATCAAGAGCTCGCTGTA-------CGTTTAAATGGAA    187
                     ||..|.|||||.|||||.|||||.||.|.|       ||       ||||
RBAM_010830__    145 GCTCTCTATACGAATCAGGAGCTTGCGGCAAGGCTCGCG-------GGAA    187

BSNT_01817___    188 TGGCTGAACTCAGAAGCGATCCAGAGCTTGCCCGGTTTGTCAAATGGATC    237
                     |.|..||.||..|..|.||.||..|.||.||.||||||||.|||||||||
RBAM_010830__    188 TAGAAGAGCTGCGGCGTGACCCGAAACTCGCGCGGTTTGTGAAATGGATC    237

BSNT_01817___    238 AGAAAACAGCCGCCTGAGAAGCTGATCAAAACAAAGAAATCAAATGAACG    287
                     ||||||||||||||.||.|||||..|.||||||||.|||.||||||||||
RBAM_010830__    238 AGAAAACAGCCGCCGGAAAAGCTTGTAAAAACAAAAAAAGCAAATGAACG    287

BSNT_01817___    288 AAAA-AAGAAAAAATGA    303
                     |||| ||          
RBAM_010830__    288 AAAATAA----------    294


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