Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01807 and RBAM_010770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01807___yhjR.1.9828.seq
# -bsequence dna-align/RBAM_010770___yhjR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01807___yhjR-RBAM_010770___yhjR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01807___yhjR-RBAM_010770___yhjR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01807___yhjR
# 2: RBAM_010770___yhjR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 288/552 (52.2%)
# Similarity: 288/552 (52.2%)
# Gaps: 156/552 (28.3%)
# Score: 761.5
#
#
#=======================================
BSNT_01807___ 1 ---------------TTGCATTACAGCTACTATCCCTATCCGGTGCCATA 35
||.||||| ||| |.||| || |.
RBAM_010770__ 1 ATGCACGAGAATTTTTTTCATTA----TAC--TGCCT-TC--------TG 35
BSNT_01807___ 36 CAGGGAAGATCCTGTTTTGATTCGAA--ATTTGCAGAAGGCCATCAACGG 83
|||.||.|||.||||..|.|| .|| ||.||...||..||||.|||||
RBAM_010770__ 36 CAGTGACGATTCTGTGCTTAT--CAAGGATCTGGTAAAATCCATAAACGG 83
BSNT_01807___ 84 AGAATTCAG----------TGCCATTCAATGCTA-CCGCAAGCTCGCCGA 122
.||||.||| |||.|.|||||..|| |||.||...||||||
RBAM_010770__ 84 CGAATACAGCGCTGTGATTTGCTACTCAATATTAGCCGAAAAAGCGCCGA 133
BSNT_01807___ 123 ACTCGCCCACAGCGATGAGGTCAGAAAACAGATTGAAGAAATCAG-GCGT 171
||.|| ||..||||||.||..||.|||.|.||||| |.|
RBAM_010770__ 134 ------CCGCA-----GAAATCAGAAGACGAATCGAACATATCAGAGAG- 171
BSNT_01807___ 172 GACGAGATTCGCCACCTCCGTGAATTTTCCACACTGTATGGTTCAATTAC 221
||.||..|.||||||||.|..|..||.||..||||||||...||||||||
RBAM_010770__ 172 GAAGAAGTGCGCCACCTGCACGCTTTCTCTTCACTGTATACGTCAATTAC 221
BSNT_01807___ 222 CGGCAAACACATCATGCCGAAACAAACGGAAGAATGCCCGGACAATTTCA 271
|||.|||||..|.|.|||||||||.|||||..|.||.|||.|||..|.||
RBAM_010770__ 222 CGGAAAACAGTTGACGCCGAAACAGACGGAGCATTGTCCGCACACATACA 271
BSNT_01807___ 272 CAAGAGGATTGGACGCCGCTTTTAAAGATGAACAAGAAACCG--TCGACT 319
.|..||||.||...||.||.|||.|.|||||.| |||||.|| | ||.|
RBAM_010770__ 272 GAGAAGGACTGAGGGCGGCGTTTTATGATGAGC-AGAAAACGAAT-GATT 319
BSNT_01807___ 320 TTTACTTGCGTGCGGCCGA---------GGAAACGTCAAACTTAAAAGCG 360
||||.||||..||..|||| |.|..|| .|||||
RBAM_010770__ 320 TTTATTTGCAGGCATCCGATAGAGCGGTGCATCCG---------GAAGCG 360
BSNT_01807___ 361 AAAGGCG--TCTTTACGCGCGCAGCACGTGATGAACAAAATCACGCTGTC 408
|| ||| |.|||.|.|||.|.|||..|||.|||||...|||.||.|||
RBAM_010770__ 361 AA--GCGGTTATTTGCCCGCACGGCATTTGACGAACAGCGTCATGCCGTC 408
BSNT_01807___ 409 TGGTTCCTATACTATCTG-------------------AT------GGAAC 433
|||||..|||||.||.|| || |||||
RBAM_010770__ 409 TGGTTTTTATACGATATGGCCCACTCTCCTTTCCACCATACAGGGGGAAC 458
BSNT_01807___ 434 GTTAG--------------------------------------------- 438
|.||.
RBAM_010770__ 459 GGTATCAAACGCGCCGAACACAAGCTACACCGAGGTGAATACCGGCAAAT 508
BSNT_01807___ 438 -- 438
RBAM_010770__ 509 AA 510
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