Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01776 and RBAM_010690
See
Amino acid alignment /
Visit
BSNT_01776 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01776___yhjD.1.9828.seq
# -bsequence dna-align/RBAM_010690___yhjD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01776___yhjD-RBAM_010690___yhjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01776___yhjD-RBAM_010690___yhjD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01776___yhjD
# 2: RBAM_010690___yhjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 388
# Identity: 252/388 (64.9%)
# Similarity: 252/388 (64.9%)
# Gaps: 44/388 (11.3%)
# Score: 775.0
#
#
#=======================================
BSNT_01776___ 1 ATGCC--AAATCTGCAGGAG-----GAAATATACGATTTAATTG--AACG 41
||||| |.|||.|.||..| | ||||.|.||.| ||.|
RBAM_010690__ 1 ATGCCTGACATCCGGAGCGGCACCCG-------CGATCTCATCGAAAAAG 43
BSNT_01776___ 42 GGCTCTCTTTTTGCCCATGGCCATTACGATTTTTAACCGTGATCTCGCCG 91
|| ||.|||.||||||||||...|.|.||..|.|||||.||.|||
RBAM_010690__ 44 GG--CTGTTTCTGCCCATGGCGGCTGCCATCCTGAACCGGGACCTC---- 87
BSNT_01776___ 92 GAA----TTGAAGAAAGCACATTAAAATTGAAGCATCCTTATAAACAGCT 137
||| ||||.....||.|.||.|||||.||.||.||.|||||||||||
RBAM_010690__ 88 GAAGCGCTTGATTCGTGCCCGTTCAAATTAAAACAACCCTATAAACAGCT 137
BSNT_01776___ 138 TATCAGCGAATCATTAAAAATAGCACAAAAGGATTTGATGGAGGTCAGAA 187
|||||||...||.||||||.||||||||||||||||||..||.||..|||
RBAM_010690__ 138 TATCAGCTGCTCTTTAAAATTAGCACAAAAGGATTTGAGTGATGTTCGAA 187
BSNT_01776___ 188 AAGAACTGAGGAAAAGAAAAATTGCAATCCGCGAGACGGAACGCGATGAA 237
||||..|.||.||..|.||||||..|||...|||..|||||.|.||.|||
RBAM_010690__ 188 AAGAGTTAAGAAAGCGTAAAATTAAAATATACGAAGCGGAAAGAGACGAA 237
BSNT_01776___ 238 GCCTTTACGCTCTATACATTTGTCATCGACGGTTATGAAGAAAACCATCG 287
||.||||||||.||||.||....|||..||||.|||||||||||.||.||
RBAM_010690__ 238 GCATTTACGCTTTATATATGCACCATTAACGGCTATGAAGAAAAACACCG 287
BSNT_01776___ 288 CTATTTTAATCCGCGAATCCGTGAGCAGGTCAGCGAATTATTAACATACT 337
.|||||.||.|||.||||..|.||.|||||.|..|..||||||..|||.|
RBAM_010690__ 288 TTATTTCAACCCGAGAATAAGGGAACAGGTAACTGCCTTATTAGAATATT 337
BSNT_01776___ 338 ATCTATTTGCCCCGGACAGACTC---CGAGCCTTTTGA 372
|.|| |.||| ||| ||.|||.|
RBAM_010690__ 338 ACCT--------------GTCTCTTGCGA-CCATTTAA 360
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.