Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00990 and RBAM_010620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00990___ydhG.1.9828.seq
# -bsequence dna-align/RBAM_010620.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00990___ydhG-RBAM_010620.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00990___ydhG-RBAM_010620.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00990___ydhG
# 2: RBAM_010620
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 415
# Identity: 245/415 (59.0%)
# Similarity: 245/415 (59.0%)
# Gaps: 86/415 (20.7%)
# Score: 656.0
#
#
#=======================================
BSNT_00990___ 1 ATGGACGTTTTTTCTGAGTATTTAGCGGGGATTGA------TGACC--CG 42
|||||||||||....||.||||||.|..|.||.|| |||.| ||
RBAM_010620 1 ATGGACGTTTTCAAAGACTATTTATCAAGTATCGACAGCCCTGATCATCG 50
BSNT_00990___ 43 T-TCCACCAAGAAAGAACGGAAGAGGT------GTTGACTTGGATCAAAG 85
| |.| |||.|||.||..| ||.||| ||.| |
RBAM_010620 51 TCTGC---------GAATGGAGGAAATCCTCTCGTGGAC--GGCT----G 85
BSNT_00990___ 86 ATAAATATCCAAATTTACATACAGAAATAAAATGGAACCAACCGATGTTT 135
|..|||.|||.||.|||.|..|..|.||.||.||||||...||.||||||
RBAM_010620 86 ACCAATTTCCGAACTTAGAAGCGCAGATCAAGTGGAACACGCCAATGTTT 135
BSNT_00990___ 136 ACGGATCACGGTACATTTATTATTGGCTTTAGTGTTTCTAAAAAGCAT-- 183
||.||||||||.||.||||||||.||||| ||...|...|||||||
RBAM_010620 136 ACCGATCACGGCACCTTTATTATCGGCTT---TGCGGCGGCAAAGCATCA 182
BSNT_00990___ 184 --TTAGCTGTCGCTCCTGAAAAAGTAACGATAGCGCACGTAGAGGATGAT 231
|.|| |||..|.||.|||.|||.....||.|||||..|....||.||.
RBAM_010620 183 TGTAAG-TGTTTCCCCCGAAGAAGCTGGAATTGCGCATTTTACCGACGAC 231
BSNT_00990___ 232 ATTG--TGAAGGCCGGATATGATTACACCGAGCAGCTGATACGTATCCC- 278
|||| || .|||||.|| |||| |.||| .||||
RBAM_010620 232 ATTGCCTG--TGCCGGCTA-------------CAGC-GCTAC--TTCCCG 263
BSNT_00990___ 279 -TTG------------------GAA-CGGTCCAGT-TGATTACACGCTAC 307
||| ||| ||||.||.| ||| |||.|
RBAM_010620 264 TTTGTTCAGAATTCAATGGACTGAACCGGTGCATTATGA------GCTGC 307
BSNT_00990___ 308 TTGAGAAAATGATTGAGTTTAATATTCTGGATAAGGCGGACTGCTCCACT 357
||||....||||||.|.||.|||||||.||||||||||||||||||..|.
RBAM_010620 308 TTGAACGCATGATTCAATTCAATATTCAGGATAAGGCGGACTGCTCAGCA 357
BSNT_00990___ 358 TTTTGGCGGAAATGA 372
|||||||||||||.|
RBAM_010620 358 TTTTGGCGGAAATAA 372
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