Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01760 and RBAM_010550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01760___yhfU.1.9828.seq
# -bsequence dna-align/RBAM_010550___yhfU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01760___yhfU-RBAM_010550___yhfU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01760___yhfU-RBAM_010550___yhfU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01760___yhfU
# 2: RBAM_010550___yhfU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 380/611 (62.2%)
# Similarity: 380/611 (62.2%)
# Gaps: 103/611 (16.9%)
# Score: 1100.5
#
#
#=======================================
BSNT_01760___ 1 ATGCTGAAATTAATCGACATGATGCATATTGCGATTTTCACCGCGCTGAT 50
.|||||||.|..||.||||||||||||||..|.||.|||||..|.||
RBAM_010550__ 1 ---ATGAAATTGACAGAAATGATGCATATTGCCGTGTTTACCGCCATTAT 47
BSNT_01760___ 51 GGCA------GTGCTCGGCTTTATGCCC-CCTCTCTTCTTATCCTTTACA 93
||.| |.||| ||| ||| ||.||.||||||||||||||.
RBAM_010550__ 48 GGGACTTTTGGGGCT--GCT-----CCCGCCGCTTTTCTTATCCTTTACG 90
BSNT_01760___ 94 CCTGTTCCGATTACATTGCAAACACTTGGTGTCATGTTGGCAGGCAGCAT 143
||.|||||||||||..|.||.||..|.|||||..|.||..|.||.|||||
RBAM_010550__ 91 CCGGTTCCGATTACGCTCCAGACGATCGGTGTGCTCTTATCGGGAAGCAT 140
BSNT_01760___ 144 TCTCAGGCC-AAAGTCTGCTTTCTTAAGCCAGCTTG-TCTTTTTGCTGCT 191
.||.|..|| |||| |.||.||.|||||||| .||| |.|||||||||.|
RBAM_010550__ 141 CCTAAAACCGAAAG-CGGCGTTTTTAAGCCA-ATTGCTGTTTTTGCTGAT 188
BSNT_01760___ 192 CGTCGCCTTCGGAGCGCCGCTGTTGCCCGGCGGACGAGGCGGTTTTGGTG 241
.||.||.|.|||||||||.||..|..|.|||||..|||||||.||.||.|
RBAM_010550__ 189 TGTGGCATGCGGAGCGCCTCTCCTTTCAGGCGGCAGAGGCGGATTCGGGG 238
BSNT_01760___ 242 TGTTTTTCGGACCGAGCGCAGGCTTTTTGATTGCTTATCCCCTCGCTTCA 291
|.||||||||.||||||||.||.|...|.||.||.|||||.||.||..||
RBAM_010550__ 239 TTTTTTTCGGGCCGAGCGCCGGATACCTCATCGCATATCCGCTGGCGGCA 288
BSNT_01760___ 292 T---GGCTGA---TCAG-----------TTTAGCCGCTAACAGGCTGCGG 324
| .||||| |||| || ||||.| |||||
RBAM_010550__ 289 TTACTGCTGAGCCTCAGCATCCAAGGCCTT----CGCTCA---GCTGC-- 329
BSNT_01760___ 325 AAGGTGACAGTATTG-----CGTCTCTTTTTCACTCATATCGTATTCGGC 369
|| |.|.|.|||.|||..||..||.|.||||||
RBAM_010550__ 330 -------------TGTCCCCCATTTGTTTATCAGACAGTTCTTGTTCGGC 366
BSNT_01760___ 370 ATCATCTTTATTTATCTGCTTGGTATTCCGGTACAAGCTTTTATCATGCA 419
.|..|.|||.|.|||.|..|.||.|||||.||.||.||||||||.|||||
RBAM_010550__ 367 GTGCTGTTTTTGTATGTCATCGGCATTCCCGTTCAGGCTTTTATGATGCA 416
BSNT_01760___ 420 TATTGATTTGTCACAGGCCGCCTTCA---TGAGCCTTGCA--TATGTGCC 464
.||||||.|.|.| .|.|||.|.| |.||||| || ||||||||
RBAM_010550__ 417 CATTGATATCTTA---ACTGCCGTAAAGCTCAGCCT--CATCTATGTGCC 461
BSNT_01760___ 465 TGGTGATTTGATAAAAGCGGCTGTATCTGCATT-TCTGGCGATAAAAATC 513
.||.|||.||.|.||||||||.|.|.|..|||| .|.|.|| |||.||||
RBAM_010550__ 462 CGGAGATCTGCTTAAAGCGGCCGCAGCCTCATTCGCAGCCG-TAAGAATC 510
BSNT_01760___ 514 A--------CT-----CAAGCCTTGTCTCTTTCTGATACGATGTTTACAA 550
| || |||||| |.||.||.|.| ||.|
RBAM_010550__ 511 AGGAAAACTCTTCAAGCAAGCC--GGCTTTTGCCG-----------ACGA 547
BSNT_01760___ 551 AAGGAGGATGA 561
|||||.|.|||
RBAM_010550__ 548 AAGGAAGCTGA 558
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