Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01759 and RBAM_010540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01759___yhfT.1.9828.seq
# -bsequence dna-align/RBAM_010540___yhfT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01759___yhfT-RBAM_010540___yhfT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01759___yhfT-RBAM_010540___yhfT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01759___yhfT
# 2: RBAM_010540___yhfT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1587
# Identity: 972/1587 (61.2%)
# Similarity: 972/1587 (61.2%)
# Gaps: 297/1587 (18.7%)
# Score: 2799.0
#
#
#=======================================
BSNT_01759___ 1 ATGACAATTAC-TCATACCTATTCATCTACTGCCGAAACATCGCCCGGCC 49
||| ||||| |||| |.||||||..|||.||||.|..|.||||.|..|
RBAM_010540__ 1 ATG---ATTACATCAT-CATATTCAGATACAGCCGGACAAGCGCCGGAAC 46
BSNT_01759___ 50 GTGTAGCGATCCAGACTGAATCGGAGCAAATCACGTACCATGATTGGGAT 99
...|.||.||.|||||.|||.|.||.||.|||||.||.||...||||.|.
RBAM_010540__ 47 AGATCGCAATTCAGACAGAAACAGAACAGATCACCTATCAAACTTGGAAC 96
BSNT_01759___ 100 CGGCTTGTCTCTCAAACCGCAAATTGGCT--GCGG----TCA---CAGCC 140
.||||.||....|||||||||||.||||| ||.| ||| .||||
RBAM_010540__ 97 AGGCTGGTTAACCAAACCGCAAACTGGCTTGGCAGCCTTTCAGGTAAGCC 146
BSNT_01759___ 141 G--------AGCA-------TGCCGAATCGTGTGGCGATCCTGC-TCCCA 174
| .||| ||||||| |.|| |||||
RBAM_010540__ 147 GGAAAACATTGCAATATTACTGCCGAA-------------CGGCATCCCA 183
BSNT_01759___ 175 AATAGTCTGGCGTTTTTACAGCTGTTTGCCGGAGCCACAGCG---GCTGG 221
||||||||.||.||.||.||.| |.||| ||.||
RBAM_010540__ 184 ------------TTTTTACAACTTTTCGCAGGGG---CGGCGCATGCCGG 218
BSNT_01759___ 222 ATGCACAGCCATTCCCATCGACACACGCT--GGAGCCCGGCTGAATGTAA 269
.|||||.||..||||..|.||..|.|||| |.|| ||||.|||.....
RBAM_010540__ 219 CTGCACGGCGGTTCCGTTAGATCCCCGCTCGGCAG--CGGCGGAACTCGC 266
BSNT_01759___ 270 GGAGCGGCTGTCCATAAGCAATGCGG--------ATCTTGTGGTTAC--- 308
|||.|.||||..|||.|||||..|.| |||| ||.||
RBAM_010540__ 267 GGACCAGCTGCACATCAGCAAAACCGGCCTCGTCATCT----GTGACCGC 312
BSNT_01759___ 309 ---TTTAGCCTTTTTCAAAAACAAACTGACAGATAG---CCAGACACCTG 352
.|.||| ..||.|||| ||..| |.|.||.||||
RBAM_010540__ 313 CGGCTGAGC----------GGCAGACTG---GACGGCGTCAAAACGCCTG 349
BSNT_01759___ 353 TTGTTTTGCTGGATAACTGTATGGCAGATATTT--------CTGAAGCAA 394
|..|..||..||||.|.| ||||...||| |.|||..||
RBAM_010540__ 350 TCATCCTGTGGGATGAAT-----GCAGGCCTTTGATCGAGGCGGAAAAAA 394
BSNT_01759___ 395 C------CGCTGATCCCTTGCCTACCATTGAT--------CCGGAGCACC 430
| |||| ||.|| |||| |
RBAM_010540__ 395 CGGAAGGCGCT----------------TTTATCAAAAACGCCGG-----C 423
BSNT_01759___ 431 CT----TTTTATATGGGATTTACGTCGGGCTCGACAGGAAAACCGAAGGC 476
|| |||||||..|||||.||.|||||.|||||.||.||.|||||.||
RBAM_010540__ 424 CTGCCCTTTTATACCGGATTCACCTCGGGATCGACCGGTAAGCCGAAAGC 473
BSNT_01759___ 477 CTTTACGCGATCTCACCGCTCATGGATAGAGAGCTTTACCTGTACAGAAA 526
|||.||.||.||||||||.||.|||.|.|||||||||.|.||||| ||||
RBAM_010540__ 474 CTTCACCCGCTCTCACCGTTCGTGGCTGGAGAGCTTTTCTTGTAC-GAAA 522
BSNT_01759___ 527 C-AGATTTTTCG--ATTTCATCAAATGACACGGTATTGATTCCCGGGACG 573
| .|| .|||| |||||..|..||||||..||..||.|.||.||.|||
RBAM_010540__ 523 CGTGA--ATTCGGCATTTCCCCTGATGACAAAGTGCTGGTACCGGGCACG 570
BSNT_01759___ 574 TTAATGTCCTCTCACTTCTTATACGGGGCAGTCAGCACTTTGTTTCTTGG 623
.|....||.||.|||||.||||||||.||.|||||||||||||||.|.||
RBAM_010540__ 571 CTTCGCTCGTCACACTTTTTATACGGCGCCGTCAGCACTTTGTTTATCGG 620
BSNT_01759___ 624 AGGAACCGT--TTGTTTGCTGAAAAAGTTTTC--TCCTGCCAAAGCGAAG 669
.|||||||| |..||....||||| ||| .||.|||..|..|||.
RBAM_010540__ 621 CGGAACCGTCATCCTTCAAAGAAAA----TTCAACCCGGCCGGAATGAAA 666
BSNT_01759___ 670 GAATGGCTGTGCCGTGAATCCATCAG---------TGTTCTCTATACCGT 710
||..||| |||| .|||||.||||||||
RBAM_010540__ 667 GACCGGC---------------TCAGACAAGCTGACGTTCTATATACCGT 701
BSNT_01759___ 711 ACCGACGATGACAGACGCC---CTCGCAAGGATTGAGGGTTTTCCCGACA 757
.|||||.|||||.|||||| |||.|| .|.||||..|||||.||.|
RBAM_010540__ 702 TCCGACAATGACGGACGCCCTGCTCTCA---CTAGAGGCGTTTCCGGATA 748
BSNT_01759___ 758 GTCCCGTCAAAATCATTTCATCCGGCGCAGACTGGCCGGCAGAATCCAAG 807
..||..||||..|.|||||.|||||.|||||||||||.||....||.||
RBAM_010540__ 749 CACCGCTCAAGGTGATTTCTTCCGGTGCAGACTGGCCCGCTTCGTCTAA- 797
BSNT_01759___ 808 GAGAAGCTTGC--------CGCTGCATGGCCTCATCTCAAGCTGTACGAT 849
|.|||| || |||| || ||.|||||...|.||||||||
RBAM_010540__ 798 -ACAAGC--GCTGTCAGAGCGCT--AT--CCCCATCTGCGGTTGTACGAT 840
BSNT_01759___ 850 TTTTACGGCACATCAGAGCTTAGTTTTGTGACGTTTTCTTCACCGGAAGA 899
||||||||.||.||.|||||.|||||.|||.||||.|..||.||.|||||
RBAM_010540__ 841 TTTTACGGAACGTCCGAGCTGAGTTTCGTGGCGTTCTTATCGCCTGAAGA 890
BSNT_01759___ 900 CAGCAAACGGAAGCCGCATTCAGCGGGCCGCCCTTTTCATAATGTCCGGA 949
||||...||.|||||..|..|.|||||||||||.|||.|.|||||....|
RBAM_010540__ 891 CAGCGCCCGAAAGCCTGACGCGGCGGGCCGCCCGTTTGAAAATGTTACAA 940
BSNT_01759___ 950 TCGAAATCCTCAACG--CTGGAGGAGAACGCTGCCAGCCAGGAGAAATCG 997
|||||||||.| || |.||.||||||||||||..|||.||.||||..|
RBAM_010540__ 941 TCGAAATCCGC--CGGCCCGGCGGAGAACGCTGCATGCCGGGCGAAACGG 988
BSNT_01759___ 998 GAAAAATATTTGTCAAAAGCCCGATGAGGTTTTCCGGCTATGTGAACGGC 1047
|.||.||.|||||.||.||||||||||..||||||||.||..|.||||||
RBAM_010540__ 989 GGAAGATTTTTGTGAACAGCCCGATGAAATTTTCCGGATACATCAACGGC 1038
BSNT_01759___ 1048 AGC-ACACCAGATGA------ATGGATGACAGTAGATGATATGGGCTACG 1090
|| |.|||.||||| .||||||||.||.|||||.|||||.||..
RBAM_010540__ 1039 -GCAAAACCTGATGATTCCGGCTGGATGACGGTTGATGACATGGGATATA 1087
BSNT_01759___ 1091 TTGATGAAGAGGGCTTTCTATACATATC--AGGAAGAGAAAACGGGATGA 1138
|.|||...||.||||.|||.| ||||| ||||.|.|||||||||||||
RBAM_010540__ 1088 TCGATCGTGAAGGCTATCTTT--ATATCGAAGGACGTGAAAACGGGATGA 1135
BSNT_01759___ 1139 TTGTGTACGGAGGATTAAATATTTTCCCAGAAGAAATTGAACGTGTGCTT 1188
|.||.|..||.||..|.|||.|.|||||||||||.||.|||||||||||.
RBAM_010540__ 1136 TCGTATCAGGCGGCCTGAATGTATTCCCAGAAGAGATAGAACGTGTGCTC 1185
BSNT_01759___ 1189 CTCGCCTGCCCAGAGGT-TGAAAGCGCGGCTGTCGTTGGCATTCCCGACG 1237
..|..|||.||.|..|| .|||| .|||||.|||.|.||||||||.||.|
RBAM_010540__ 1186 AACCGCTGTCCGGGCGTCAGAAA-AGCGGCCGTCATCGGCATTCCTGATG 1234
BSNT_01759___ 1238 AGTATTGGGG-AGAAATCGCTGTAGCTGTCATTCTTGGAAACGCTAATGC 1286
|.|||||||| || .|||||.||.||.||.||....|||.|.||.||||.
RBAM_010540__ 1235 ATTATTGGGGCAG-CATCGCCGTTGCGGTGATCGACGGACATGCAAATGT 1283
BSNT_01759___ 1287 CA--GAACACTGAAAGCCTGGTGTAAACAGAAATT------AGC--CT-- 1324
.| || |||||| .|||||| | ||| ||
RBAM_010540__ 1284 AAAGGA--ACTGAA---------GAAACAG----TGCCGCGAGCAGCTGG 1318
BSNT_01759___ 1325 ---CCTATAAAATTCCGAAAAAATGGGTGTTTGCAGACAGCTTGCCGGAA 1371
|.||||||||.||||||||||||.|||||.||||.| |.||||||
RBAM_010540__ 1319 CGGCATATAAAATCCCGAAAAAATGGCTGTTTTCAGAAA---TACCGGAA 1365
BSNT_01759___ 1372 ACGAG-CAGCGGAAAAATTGCCCGTTCCAGAGTGAAAAA----------- 1409
|| || |.|||||||.||.||||||.||...||..||||
RBAM_010540__ 1366 AC-AGCCGGCGGAAAGATCGCCCGTGCCGCCGTACAAAAGCAGGCAAAGG 1414
BSNT_01759___ 1410 -----ATGG-CTGGAAGAGAGTGTACAGTATAAATGA 1440
|||| .|||||| .||||.
RBAM_010540__ 1415 ACATGATGGAATGGAAG---CTGTAA----------- 1437
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