Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01757 and RBAM_010530

See Amino acid alignment / Visit BSNT_01757 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_01757___yhfS.1.9828.seq
#    -bsequence dna-align/RBAM_010530___yhfS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01757___yhfS-RBAM_010530___yhfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01757___yhfS-RBAM_010530___yhfS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01757___yhfS
# 2: RBAM_010530___yhfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity:     775/1139 (68.0%)
# Similarity:   775/1139 (68.0%)
# Gaps:          91/1139 ( 8.0%)
# Score: 2414.5
# 
#
#=======================================

BSNT_01757___      1 ATGAATGCGGTTATTATTGATGCAAAACGAACGATCTTT------GGAAA     44
                     |||.|.||.||.||||..|||||.|||||.||.|| |||      ||   
RBAM_010530__      1 ATGGAAGCTGTAATTACGGATGCGAAACGGACAAT-TTTCGCCCGGG---     46

BSNT_01757___     45 TCAAAACGGACTGCTGAAGCCCTTCCTGCCGGAGGATTTGGCGGCTCCCA     94
                       |||||||.|||.|.||...||..||.||.||.||||||||.|||||..
RBAM_010530__     47 --AAAACGGCCTGTTAAAAGACTGTCTCCCAGAAGATTTGGCAGCTCCGC     94

BSNT_01757___     95 TCATCCGCTGTCTCAGCCGAAA---GCTAGAGGATCAAGTTGACGAGGTC    141
                     |.||||||..|.|.|||||.||   ||..||.|| ||  ||||.||.|||
RBAM_010530__     95 TGATCCGCCATTTGAGCCGGAACATGCCCGAAGA-CA--TTGATGAAGTC    141

BSNT_01757___    142 ATTCTCGGAAACGCTACTGGCAGAGGCGGCAACCTGGCCAGACTGTCAGC    191
                     .|..||||||||||.||.|||.|.|||||.||.||.|||.|.||||||||
RBAM_010530__    142 CTGATCGGAAACGCGACGGGCCGCGGCGGGAATCTCGCCCGGCTGTCAGC    191

BSNT_01757___    192 CCTTCAAGCCGGACTGCCTTT-ATCAGTTCCCGGAATGACAATTGACAGA    240
                     |.|....||||||||.||||| |.| ||..||||.|.|||.||.|||||.
RBAM_010530__    192 CTTGGCCGCCGGACTTCCTTTGAGC-GTGTCCGGTACGACCATCGACAGG    240

BSNT_01757___    241 CAGTGCGGCTCCGGCCTTGAAGCTGTG-----CGCTATGCCTGCAGCCTT    285
                     ||||||||||||||.||.||.||.|||     ||| .||||     .|||
RBAM_010530__    241 CAGTGCGGCTCCGGACTGGACGCCGTGAGGGTCGC-GTGCC-----ACTT    284

BSNT_01757___    286 ATTCAAGCAGGAGCCGGCACG------ATGTATATCGCGGGCGGCTCAGA    329
                     ..||||     |||||||.||      |.|||.||||||||.||..|.||
RBAM_010530__    285 TGTCAA-----AGCCGGCGCGGGGAGAACGTACATCGCGGGAGGAGCGGA    329

BSNT_01757___    330 AAGCAGCAGCCAATCCCCTTTTTCAGAACGGGCTCGCTTTTCTCCAGATG    379
                     .||||||||||..||||||||.|||...|||||.|||||||||||.||..
RBAM_010530__    330 GAGCAGCAGCCGTTCCCCTTTCTCATCCCGGGCGCGCTTTTCTCCTGAAC    379

BSNT_01757___    380 CGATCGGCGATCCAGACATGGGCATTGCGGCAGAATATACGGCTGCACGC    429
                     ..|||||||||||.||.||||||||.||.|||||.|||||||| .||.||
RBAM_010530__    380 ACATCGGCGATCCTGATATGGGCATAGCAGCAGAGTATACGGC-ACAGGC    428

BSNT_01757___    430 TATTC--CATCAGCAGAAGCATGCAGGATGAGTACGCGCTTCTCAGCCAT    477
                     | |.|  |.|.|..||||..||||||||.||.||.||.|||||||||.||
RBAM_010530__    429 T-TACGGCGTAACGAGAAAGATGCAGGACGAATATGCCCTTCTCAGCTAT    477

BSNT_01757___    478 CAACGCAGCAGGAACGCGCATGAGGAAGGATTTTACCGTGAAGAAGTTGT    527
                     .||||.||||..||.|||||.||.||.||.||.|||||....|||.||.|
RBAM_010530__    478 GAACGGAGCATCAAAGCGCACGAAGACGGCTTGTACCGCCCGGAAATTCT    527

BSNT_01757___    528 TGC---TCTCGGGGAATTGGAGACGGACGAA-----GCATTTTTGAAAAC    569
                     |.|   ||.|||   |||.|...|.||||||     ||     ||||||.
RBAM_010530__    528 TCCCTGTCACGG---ATTCGCCGCTGACGAAAACATGC-----TGAAAAA    569

BSNT_01757___    570 GCGGCCAATAGAAGCGATTATTCCCCGTGCAAAGCCGGT-TTTCGACACC    618
                     ||||...||.||..|..|.||..|||||||.|||||.|| |||      |
RBAM_010530__    570 GCGGAACATGGAGCCTCTCATCTCCCGTGCCAAGCCCGTCTTT------C    613

BSNT_01757___    619 AGCTCCGGA---ACAGTCACAGCAGCCAACAGCAGTGGCATAGCAGACGG    665
                     || ||||||   .|.|||||.||.|||||||||.|.||.||..|.|||||
RBAM_010530__    614 AG-TCCGGAGGCTCTGTCACCGCCGCCAACAGCTGCGGAATTTCTGACGG    662

BSNT_01757___    666 AGCAGCGGCTCTTTTGGTAATGGAAGAAGAAAAAGCGGCAG-CCCTGGGA    714
                     .||.|||||..|||..||.|||||||||.||||||| ||.| |.||.||.
RBAM_010530__    663 GGCGGCGGCAGTTTGTGTGATGGAAGAACAAAAAGC-GCGGTCTCTCGGT    711

BSNT_01757___    715 CTTAAGCCTGTGCTT-CGGTTTATCGGCAGCGCTGTCAGCGGGATTCACC    763
                     .|.||||| |.|.|| ||.||||||||.|||||.||.|||||..|.||.|
RBAM_010530__    712 TTAAAGCC-GGGATTGCGTTTTATCGGAAGCGCGGTAAGCGGCGTCCATC    760

BSNT_01757___    764 CCAACTATCCGCCCGCGGCACCGGTTGATGCGATCCGT----AATCTCTT    809
                     |..|.||||||.|.||.||.||||||.|||    ||||    ||.||.||
RBAM_010530__    761 CGCATTATCCGTCAGCAGCTCCGGTTTATG----CCGTCAAAAAGCTTTT    806

BSNT_01757___    810 ACATACACACGA--TGTAACACCTGAGGATATCGGTTTATTTGAAATCAA    857
                     ..|...||..||  |||  ||||.||.|||||.|.|.|||..||||||||
RBAM_010530__    807 GAAGGAACGGGACCTGT--CACCGGATGATATTGATATATACGAAATCAA    854

BSNT_01757___    858 TGAAGCCTTTGCCGTCAAAATTTGTGTCTGCTCGCAAGAACTCGGCATTC    907
                     .||.||.||||||||||||||.||.||.|..||.||..|.||..|..|.|
RBAM_010530__    855 CGAGGCGTTTGCCGTCAAAATATGCGTTTTTTCACAGCAGCTTCGAGTGC    904

BSNT_01757___    908 CCTTTTCAAAAATCAATGTGCGCGGCGGCGCATTAGCTCTTGGCCATCCG    957
                     |.|.|||.|||||.|||||..|.||||||||..|.||..|.||.||||||
RBAM_010530__    905 CGTATTCTAAAATAAATGTCAGGGGCGGCGCTCTGGCCGTCGGGCATCCG    954

BSNT_01757___    958 TACGGTGCATCAGGTGCAGCTCTGGTAACCAGATTGTTTTATGAAGCGAA   1007
                     |||||.||.||.||.||.||.||.||.|||.|..|.|||||||||||.||
RBAM_010530__    955 TACGGGGCTTCCGGGGCGGCGCTTGTCACCCGGCTTTTTTATGAAGCAAA   1004

BSNT_01757___   1008 AAGACGGACAGACTG-TCAATATGTTGTTGCAGCCATCGGAAGCGGCGGC   1056
                     ||||||..|.|| || .|..||.|..|..|||||.|||||.|||||.|||
RBAM_010530__   1005 AAGACGCCCGGA-TGCCCGCTACGCAGCAGCAGCGATCGGCAGCGGAGGC   1053

BSNT_01757___   1057 GGAATTGGACTGGCTTTATTATTTGAAGTTCTTGCATAG   1095
                     |||.|.||||||||..|..|.||||||||..|..|.||.
RBAM_010530__   1054 GGAGTCGGACTGGCGCTTCTCTTTGAAGTGTTAACGTAA   1092


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