Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01757 and RBAM_010530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01757___yhfS.1.9828.seq
# -bsequence dna-align/RBAM_010530___yhfS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01757___yhfS-RBAM_010530___yhfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01757___yhfS-RBAM_010530___yhfS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01757___yhfS
# 2: RBAM_010530___yhfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity: 775/1139 (68.0%)
# Similarity: 775/1139 (68.0%)
# Gaps: 91/1139 ( 8.0%)
# Score: 2414.5
#
#
#=======================================
BSNT_01757___ 1 ATGAATGCGGTTATTATTGATGCAAAACGAACGATCTTT------GGAAA 44
|||.|.||.||.||||..|||||.|||||.||.|| ||| ||
RBAM_010530__ 1 ATGGAAGCTGTAATTACGGATGCGAAACGGACAAT-TTTCGCCCGGG--- 46
BSNT_01757___ 45 TCAAAACGGACTGCTGAAGCCCTTCCTGCCGGAGGATTTGGCGGCTCCCA 94
|||||||.|||.|.||...||..||.||.||.||||||||.|||||..
RBAM_010530__ 47 --AAAACGGCCTGTTAAAAGACTGTCTCCCAGAAGATTTGGCAGCTCCGC 94
BSNT_01757___ 95 TCATCCGCTGTCTCAGCCGAAA---GCTAGAGGATCAAGTTGACGAGGTC 141
|.||||||..|.|.|||||.|| ||..||.|| || ||||.||.|||
RBAM_010530__ 95 TGATCCGCCATTTGAGCCGGAACATGCCCGAAGA-CA--TTGATGAAGTC 141
BSNT_01757___ 142 ATTCTCGGAAACGCTACTGGCAGAGGCGGCAACCTGGCCAGACTGTCAGC 191
.|..||||||||||.||.|||.|.|||||.||.||.|||.|.||||||||
RBAM_010530__ 142 CTGATCGGAAACGCGACGGGCCGCGGCGGGAATCTCGCCCGGCTGTCAGC 191
BSNT_01757___ 192 CCTTCAAGCCGGACTGCCTTT-ATCAGTTCCCGGAATGACAATTGACAGA 240
|.|....||||||||.||||| |.| ||..||||.|.|||.||.|||||.
RBAM_010530__ 192 CTTGGCCGCCGGACTTCCTTTGAGC-GTGTCCGGTACGACCATCGACAGG 240
BSNT_01757___ 241 CAGTGCGGCTCCGGCCTTGAAGCTGTG-----CGCTATGCCTGCAGCCTT 285
||||||||||||||.||.||.||.||| ||| .|||| .|||
RBAM_010530__ 241 CAGTGCGGCTCCGGACTGGACGCCGTGAGGGTCGC-GTGCC-----ACTT 284
BSNT_01757___ 286 ATTCAAGCAGGAGCCGGCACG------ATGTATATCGCGGGCGGCTCAGA 329
..|||| |||||||.|| |.|||.||||||||.||..|.||
RBAM_010530__ 285 TGTCAA-----AGCCGGCGCGGGGAGAACGTACATCGCGGGAGGAGCGGA 329
BSNT_01757___ 330 AAGCAGCAGCCAATCCCCTTTTTCAGAACGGGCTCGCTTTTCTCCAGATG 379
.||||||||||..||||||||.|||...|||||.|||||||||||.||..
RBAM_010530__ 330 GAGCAGCAGCCGTTCCCCTTTCTCATCCCGGGCGCGCTTTTCTCCTGAAC 379
BSNT_01757___ 380 CGATCGGCGATCCAGACATGGGCATTGCGGCAGAATATACGGCTGCACGC 429
..|||||||||||.||.||||||||.||.|||||.|||||||| .||.||
RBAM_010530__ 380 ACATCGGCGATCCTGATATGGGCATAGCAGCAGAGTATACGGC-ACAGGC 428
BSNT_01757___ 430 TATTC--CATCAGCAGAAGCATGCAGGATGAGTACGCGCTTCTCAGCCAT 477
| |.| |.|.|..||||..||||||||.||.||.||.|||||||||.||
RBAM_010530__ 429 T-TACGGCGTAACGAGAAAGATGCAGGACGAATATGCCCTTCTCAGCTAT 477
BSNT_01757___ 478 CAACGCAGCAGGAACGCGCATGAGGAAGGATTTTACCGTGAAGAAGTTGT 527
.||||.||||..||.|||||.||.||.||.||.|||||....|||.||.|
RBAM_010530__ 478 GAACGGAGCATCAAAGCGCACGAAGACGGCTTGTACCGCCCGGAAATTCT 527
BSNT_01757___ 528 TGC---TCTCGGGGAATTGGAGACGGACGAA-----GCATTTTTGAAAAC 569
|.| ||.||| |||.|...|.|||||| || ||||||.
RBAM_010530__ 528 TCCCTGTCACGG---ATTCGCCGCTGACGAAAACATGC-----TGAAAAA 569
BSNT_01757___ 570 GCGGCCAATAGAAGCGATTATTCCCCGTGCAAAGCCGGT-TTTCGACACC 618
||||...||.||..|..|.||..|||||||.|||||.|| ||| |
RBAM_010530__ 570 GCGGAACATGGAGCCTCTCATCTCCCGTGCCAAGCCCGTCTTT------C 613
BSNT_01757___ 619 AGCTCCGGA---ACAGTCACAGCAGCCAACAGCAGTGGCATAGCAGACGG 665
|| |||||| .|.|||||.||.|||||||||.|.||.||..|.|||||
RBAM_010530__ 614 AG-TCCGGAGGCTCTGTCACCGCCGCCAACAGCTGCGGAATTTCTGACGG 662
BSNT_01757___ 666 AGCAGCGGCTCTTTTGGTAATGGAAGAAGAAAAAGCGGCAG-CCCTGGGA 714
.||.|||||..|||..||.|||||||||.||||||| ||.| |.||.||.
RBAM_010530__ 663 GGCGGCGGCAGTTTGTGTGATGGAAGAACAAAAAGC-GCGGTCTCTCGGT 711
BSNT_01757___ 715 CTTAAGCCTGTGCTT-CGGTTTATCGGCAGCGCTGTCAGCGGGATTCACC 763
.|.||||| |.|.|| ||.||||||||.|||||.||.|||||..|.||.|
RBAM_010530__ 712 TTAAAGCC-GGGATTGCGTTTTATCGGAAGCGCGGTAAGCGGCGTCCATC 760
BSNT_01757___ 764 CCAACTATCCGCCCGCGGCACCGGTTGATGCGATCCGT----AATCTCTT 809
|..|.||||||.|.||.||.||||||.||| |||| ||.||.||
RBAM_010530__ 761 CGCATTATCCGTCAGCAGCTCCGGTTTATG----CCGTCAAAAAGCTTTT 806
BSNT_01757___ 810 ACATACACACGA--TGTAACACCTGAGGATATCGGTTTATTTGAAATCAA 857
..|...||..|| ||| ||||.||.|||||.|.|.|||..||||||||
RBAM_010530__ 807 GAAGGAACGGGACCTGT--CACCGGATGATATTGATATATACGAAATCAA 854
BSNT_01757___ 858 TGAAGCCTTTGCCGTCAAAATTTGTGTCTGCTCGCAAGAACTCGGCATTC 907
.||.||.||||||||||||||.||.||.|..||.||..|.||..|..|.|
RBAM_010530__ 855 CGAGGCGTTTGCCGTCAAAATATGCGTTTTTTCACAGCAGCTTCGAGTGC 904
BSNT_01757___ 908 CCTTTTCAAAAATCAATGTGCGCGGCGGCGCATTAGCTCTTGGCCATCCG 957
|.|.|||.|||||.|||||..|.||||||||..|.||..|.||.||||||
RBAM_010530__ 905 CGTATTCTAAAATAAATGTCAGGGGCGGCGCTCTGGCCGTCGGGCATCCG 954
BSNT_01757___ 958 TACGGTGCATCAGGTGCAGCTCTGGTAACCAGATTGTTTTATGAAGCGAA 1007
|||||.||.||.||.||.||.||.||.|||.|..|.|||||||||||.||
RBAM_010530__ 955 TACGGGGCTTCCGGGGCGGCGCTTGTCACCCGGCTTTTTTATGAAGCAAA 1004
BSNT_01757___ 1008 AAGACGGACAGACTG-TCAATATGTTGTTGCAGCCATCGGAAGCGGCGGC 1056
||||||..|.|| || .|..||.|..|..|||||.|||||.|||||.|||
RBAM_010530__ 1005 AAGACGCCCGGA-TGCCCGCTACGCAGCAGCAGCGATCGGCAGCGGAGGC 1053
BSNT_01757___ 1057 GGAATTGGACTGGCTTTATTATTTGAAGTTCTTGCATAG 1095
|||.|.||||||||..|..|.||||||||..|..|.||.
RBAM_010530__ 1054 GGAGTCGGACTGGCGCTTCTCTTTGAAGTGTTAACGTAA 1092
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