Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01731 and RBAM_010400

See Amino acid alignment / Visit BSNT_01731 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01731___fabHB.1.9828.seq
#    -bsequence dna-align/RBAM_010400___fabHB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01731___fabHB-RBAM_010400___fabHB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01731___fabHB-RBAM_010400___fabHB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01731___fabHB
# 2: RBAM_010400___fabHB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1017
# Identity:     741/1017 (72.9%)
# Similarity:   741/1017 (72.9%)
# Gaps:          78/1017 ( 7.7%)
# Score: 2589.0
# 
#
#=======================================

BSNT_01731___      1 ATGTCAAAAGCAAAAATTACAGCTATCGGCACCTATGCGCCGAGCA-GAC     49
                     |||||||||.|.|||||||||||.|||||.||.|||||.||| ||| |.|
RBAM_010400__      1 ATGTCAAAATCTAAAATTACAGCAATCGGTACATATGCTCCG-GCACGCC     49

BSNT_01731___     50 GTTTAACCAATGCAGATTTAGAAAAGATCGTTGATACCTCTGATGAATGG     99
                     |.|||||.||.||.|||||.||....|||||.|||||.||||||||||||
RBAM_010400__     50 GATTAACAAACGCGGATTTGGAGCGCATCGTCGATACATCTGATGAATGG     99

BSNT_01731___    100 ATCGTTCAGCGCACAGGAATGAGAGAACGCCGGATTGCGGATGAACATCA    149
                     |||||.||||||||.||.||||..|||.|.||.|||||.|..||||||.|
RBAM_010400__    100 ATCGTCCAGCGCACCGGTATGAAGGAAAGACGCATTGCCGGCGAACATGA    149

BSNT_01731___    150 ATTTACCTCTGATTTATGCATAGAAGCGGTGAAGAATCT--CAAGAGCCG    197
                     |||.||.||.|||||.||..|.|||||||||||.||.||  ||..|  ||
RBAM_010400__    150 ATTCACATCGGATTTGTGTGTGGAAGCGGTGAAAAACCTTGCAGAA--CG    197

BSNT_01731___    198 TTATAAAGGAACACTTGATGATGTCGATATGATCCTCGTTGCCACAACCA    247
                     .||.|..|||||.|||||||||||||||||||||||.||.||||||||.|
RBAM_010400__    198 ATACAGCGGAACTCTTGATGATGTCGATATGATCCTTGTCGCCACAACGA    247

BSNT_01731___    248 CATCCGATTACGCCTTTCCGAGTA---CGGCATGCCGCGTACAGGAATAT    294
                     |..|.||.||.||.|||||.||.|   |||||   |||||.||||..||.
RBAM_010400__    248 CGGCGGACTATGCGTTTCCAAGCACCGCGGCA---CGCGTGCAGGCTTAC    294

BSNT_01731___    295 TTCGGCTGG--GAAAGCACCGGCGCGCTGGATATTAATGCGACATGCGCC    342
                     |||||||||  |.|  |||.||.|||||.||||||||.||.|||||||||
RBAM_010400__    295 TTCGGCTGGCCGCA--CACGGGGGCGCTTGATATTAACGCCACATGCGCC    342

BSNT_01731___    343 GGGCTGACTTACGGCCTCCATTTGGCAAATGGATTGATCACATCAGGCCT    392
                     ||.||.|||||||||||.||..|.|||.|.|.|||.||.||..|.||  |
RBAM_010400__    343 GGACTCACTTACGGCCTTCAGCTCGCAGACGCATTAATTACCGCCGG--T    390

BSNT_01731___    393 T--CATCAAAAAATTCTCGTCATCGCCGGAGAGACGTTATCAAAGGTAAC    440
                     |  |||||||||.|..|.|||||.|||||.||.||.||||||||||||||
RBAM_010400__    391 TCCCATCAAAAAGTGATTGTCATTGCCGGTGAAACATTATCAAAGGTAAC    440

BSNT_01731___    441 GGATTATACCGATCGAACGACATGCGTACTGTTCGGCGATGCCGCGGGTG    490
                     |||||||||.||.||.|||||.|||||.||.|||||.||.||.||.||.|
RBAM_010400__    441 GGATTATACTGACCGGACGACCTGCGTTCTTTTCGGAGACGCTGCTGGCG    490

BSNT_01731___    491 CGCTGTTAGTAGAACGAGATGAA-GAGACGCCGGGATTTCTTGCGTCTGT    539
                     |.||.||.||||||||.||.||| .|| |||||||.|||.|.||..|.||
RBAM_010400__    491 CCCTATTGGTAGAACGCGACGAATCAG-CGCCGGGCTTTTTGGCAGCCGT    539

BSNT_01731___    540 ACAAGGAACAAGCGGGAACGGCGGC---GATATTTTGTATCGTGCCGGAC    586
                     .|||||||| |||||||  |||.||   ||..|..|||||||..|.||||
RBAM_010400__    540 GCAAGGAAC-AGCGGGA--GGCAGCGCGGACGTGCTGTATCGCACGGGAC    586

BSNT_01731___    587 T--GCGAAATGAAATAAACGGTGTGCAGCTT---GTCGGTTCCGGAAAAA    631
                     |  |||.|  |||.|||||||.|.||.||||   |.|||   .|||||.|
RBAM_010400__    587 TGAGCGCA--GAATTAAACGGCGAGCCGCTTAAAGGCGG---AGGAAACA    631

BSNT_01731___    632 TGGTGCAAAACGGACGCGAGGTATATAAATGGGCCGCAAGAACCGTCCCT    681
                     |||||||||||||.|||||.||||||||||||||.||.||||||||.|||
RBAM_010400__    632 TGGTGCAAAACGGGCGCGAAGTATATAAATGGGCGGCCAGAACCGTGCCT    681

BSNT_01731___    682 GGCGAATTTGAACGG--CTTTTACATAAAGCAGGACTCAGCTCT------    723
                     |..|||  ||.|..|  ||||||.|.|||||      |.|||.|      
RBAM_010400__    682 GAGGAA--TGCAATGCCCTTTTAGAAAAAGC------CGGCTTTTCAAAA    723

BSNT_01731___    724 GATGATCTCGATTGGTTTGTTCCTCACAGCGCCAACTTGCGCATGATCGA    773
                     ||.|||||.||||||||.||||||||||||||||||.||||.||||||||
RBAM_010400__    724 GACGATCTGGATTGGTTCGTTCCTCACAGCGCCAACATGCGGATGATCGA    773

BSNT_01731___    774 GTCAATTTGTGAAAAAACACCGTTCCCGATTGAAAAAACGCTCACTAGTG    823
                     .||.||.||.||||||...||.|||||..|||||...||..|.||.||.|
RBAM_010400__    774 ATCCATCTGCGAAAAACTGCCCTTCCCACTTGAACGGACATTGACAAGCG    823

BSNT_01731___    824 TTGAACACTATGGAAACACGTCTTCGGTTTCAATTGTTTTGGCGCTCGAT    873
                     |||||.|.||.||.|||||.||.||||||||.|||.||.|.||..|.|||
RBAM_010400__    824 TTGAATATTACGGCAACACTTCATCGGTTTCTATTATTCTCGCATTGGAT    873

BSNT_01731___    874 CTCGCAGTGAAAGCCGGGAAGCTGAAAA--------AAGATCAAA---TC    912
                     ...||.||||||||    ||    ||||        |||..||.|   |.
RBAM_010400__    874 GAAGCTGTGAAAGC----AA----AAAAACTGTCGGAAGGCCAGACGCTG    915

BSNT_01731___    913 GTTTTGCTTTTCGGGTTTGGCGGCGGATTAACCTATACAGGATTGCTTAT    962
                     ||.|   |.||||||||.|||||||||||.||.|||||.|||.|| ||..
RBAM_010400__    916 GTAT---TATTCGGGTTCGGCGGCGGATTGACGTATACCGGACTG-TTGG    961

BSNT_01731___    963 TAA-ATGGGGAATGTAA    978
                     ||| |||||||.|.|||
RBAM_010400__    962 TAAGATGGGGATTTTAA    978


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.