Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01730 and RBAM_010390

See Amino acid alignment / Visit BSNT_01730 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01730___yhgE.1.9828.seq
#    -bsequence dna-align/RBAM_010390___yhgE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01730___yhgE-RBAM_010390___yhgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01730___yhgE-RBAM_010390___yhgE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01730___yhgE
# 2: RBAM_010390___yhgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2414
# Identity:    1757/2414 (72.8%)
# Similarity:  1757/2414 (72.8%)
# Gaps:         166/2414 ( 6.9%)
# Score: 6187.0
# 
#
#=======================================

BSNT_01730___      1 ATGAACACAATACGAAGTCAGTGGAAAGACATCGTAACAAGTAAAAAATT     50
                     .||||.||||||..|||.||||||||||||||.|||||.|..||.|||.|
RBAM_010390__      1 TTGAATACAATAAAAAGCCAGTGGAAAGACATTGTAACGAACAAGAAACT     50

BSNT_01730___     51 ATTGATTCCCATCATCGCCATTTTGTTTGTCCCGCTTATTTACAGCGGCG    100
                     .||.||.||||||||.|||||.||.||.||.|||||.||.||||||||.|
RBAM_010390__     51 GTTAATCCCCATCATTGCCATATTATTCGTTCCGCTGATCTACAGCGGAG    100

BSNT_01730___    101 TATTCTTAAAGGCTTATTGGGACCCGTACGGCACAGTTGACCAGCTGCCT    150
                     |.||.||.|||||.||.|||||||||||||||||.||.||.||||||||.
RBAM_010390__    101 TGTTTTTGAAGGCGTACTGGGACCCGTACGGCACGGTGGATCAGCTGCCG    150

BSNT_01730___    151 GTCGTTGTCGTCAACCAAGACAAGGGAGC-AACGTATGAAGGAGAAA-AA    198
                     ||.||.||.||||||||.||.||.||.|| .|| ||.||||| |||| |.
RBAM_010390__    151 GTTGTCGTTGTCAACCAGGATAAAGGGGCGGAC-TACGAAGG-GAAACAT    198

BSNT_01730___    199 CTTCAAATCGGTGATGATCTGGTCAAAGAATTAAAGGATAATAACAACTT    248
                     |||||.||||||||.|||||.||.|||||.||||||.|.|||.|.||.||
RBAM_010390__    199 CTTCAGATCGGTGACGATCTTGTGAAAGAGTTAAAGAAAAATGATAATTT    248

BSNT_01730___    249 TGATTGGCATTTTTCCAATGATCTCGACCAATCGTTAAAGGACTTATTGA    298
                     |||||||||||||||.|..|||||.||.||||||||||||||||||||.|
RBAM_010390__    249 TGATTGGCATTTTTCAAGCGATCTTGATCAATCGTTAAAGGACTTATTAA    298

BSNT_01730___    299 ATCAAAAATATTATTTAGTTGTCGAGATTCCTGAGGATTTTTCTAAGAAT    348
                     ||...||||||||||||.|.||||||||||||||.|||||||||||.||.
RBAM_010390__    299 ATGCTAAATATTATTTATTGGTCGAGATTCCTGAAGATTTTTCTAATAAC    348

BSNT_01730___    349 GCCAGCACCGTGTTGGACAAAAATCCAAAAAAATTGGATCTGAAATACCA    398
                     ||||||||.||..||||.||||||||.||.||..|||||||||||||.||
RBAM_010390__    349 GCCAGCACGGTAATGGATAAAAATCCGAAGAAGCTGGATCTGAAATATCA    398

BSNT_01730___    399 TACAAATGCCGGTTCCAACTATGTAGGGGCAACGATCGGTGAAAAAGCGA    448
                     |||.||||||||.||.||||||||.||.||.||.|||||.|||||.||||
RBAM_010390__    399 TACGAATGCCGGATCAAACTATGTCGGCGCGACAATCGGGGAAAAGGCGA    448

BSNT_01730___    449 TTGATAAACTGAAAGCTTCTGTTTCTAAAGAAGTGACAGAGCAATATACG    498
                     |.||.|||||||||||.||.||.||.||||||||||||||||||||..|.
RBAM_010390__    449 TCGACAAACTGAAAGCCTCCGTGTCGAAAGAAGTGACAGAGCAATACGCA    498

BSNT_01730___    499 AAAGTTATTTTTGATAACTTTAAAGATATCGCAAAAGGTTTGAGCGACGC    548
                     |||||.|||||||||||||||||||||||.||.|||||..|..||.|.||
RBAM_010390__    499 AAAGTCATTTTTGATAACTTTAAAGATATTGCCAAAGGGCTCGGCAAAGC    548

BSNT_01730___    549 GAGCAGCGGCGCGAAAAAAATTGATGACGGCACAAAGGATGCGAAAAACG    598
                     .||||||||.||.||.|||||.||.||||||||.||..|.||||||.|||
RBAM_010390__    549 CAGCAGCGGAGCCAAGAAAATAGACGACGGCACGAAAAACGCGAAAGACG    598

BSNT_01730___    599 GAAGCGCACAGCTGAAAGAAAATCTGGCGAAGCTGAAGGAAAGCACCGCT    648
                     |.|||||..|||||||.||||||.|.||||||||.|..|||||||||||.
RBAM_010390__    599 GCAGCGCCAAGCTGAAGGAAAATTTAGCGAAGCTTACTGAAAGCACCGCC    648

BSNT_01730___    649 ACCATCAGTGACAAAACAGCGCAGCTTGCAGATGGAGCGGCTCAGGTGAC    698
                     ||||||.|.||.||||||..||||||||||||.||.|||||..|.|||||
RBAM_010390__    649 ACCATCGGCGATAAAACACAGCAGCTTGCAGACGGCGCGGCGAAAGTGAC    698

BSNT_01730___    699 GAGCGGCATCCAATCACTTGATAGCTCGCTCGGTAAATTCCAGGACAGCA    748
                     .|||||.||.|||.|.|||||.|||||..|||..|||.|.|||   ||| 
RBAM_010390__    699 AAGCGGAATTCAAACGCTTGACAGCTCTATCGCAAAACTTCAG---AGC-    744

BSNT_01730___    749 GCAA----CCAGATTTATGATAAATCTAGTCAGCTTGCAGCAGGATCAGG    794
                     ||||    |.|.|||.|.||||||||..|.|||.||||..|||||..|||
RBAM_010390__    745 GCAAGCGCCGAAATTCAAGATAAATCAGGACAGATTGCTTCAGGAGGAGG    794

BSNT_01730___    795 -CAAGATAACGGGCAA----GCTGAATGAACTGAATGCCGGCCTT-----    834
                      ||||     .|||.|    ||||||  |||  ||     |||||     
RBAM_010390__    795 CCAAG-----TGGCCAGCGGGCTGAA--AAC--AA-----GCCTTGACGC    830

BSNT_01730___    835 -CAAAAGGTGCAGCAG----GGCTTGCCTAATCTGACAAACGGGCTGGAT    879
                      ||||||..||..|||    .|||| ||..||.|.||.||     |||||
RBAM_010390__    831 ACAAAAGCAGCTCCAGCAAAAGCTT-CCGGATTTAACGAA-----TGGAT    874

BSNT_01730___    880 CA-----GCTCAACAGTAAAGCGCAAGAAGGTTCTGAGAAAGCAGCAAAA    924
                     .|     |.|.|||||.||.|||||.||||..||       |||  ||||
RBAM_010390__    875 TAAGTGCGTTAAACAGCAAGGCGCAGGAAGTGTC-------GCA--AAAA    915

BSNT_01730___    925 GCGGAAAAACTTATAAATGCGCTCGATTTAACGAAGCT-TGAAACAGCTG    973
                     ||||....|.||..|.|||||.||.|||.|...||.|| |.|.|||   .
RBAM_010390__    916 GCGGCGGCATTTGAAGATGCGATCAATTCAGTCAACCTGTCAGACA---T    962

BSNT_01730___    974 TGAATAAC------------CTCGAAAAGTCAGAAACAGCGA--TGAAGG   1009
                     |||| |||            ||||||.||.|.|||| || ||  ||.||.
RBAM_010390__    963 TGAA-AACGCGGTTGGGCAGCTCGAACAGACTGAAA-AG-GATCTGCAGC   1009

BSNT_01730___   1010 AATTTAAAAAACAGCTGTCTGACTTTG-AAAACAGCTTAAAAAACCGTGA   1058
                     |.|||||.||..||||.||||| |.|| ||||||||.|..|...|||.||
RBAM_010390__   1010 AGTTTAAGAAGAAGCTTTCTGA-TCTGAAAAACAGCCTGGATGCCCGGGA   1058

BSNT_01730___   1059 TCAGGCATTCAAAAATCTCATCAACTCGAGTGATTTCTTAACAGCAGAGC   1108
                     |.|.||..|||||||..|.||.||....||||||||||||||.|..||||
RBAM_010390__   1059 TGATGCGGTCAAAAAGGTGATTAAGGACAGTGATTTCTTAACGGATGAGC   1108

BSNT_01730___   1109 AAAAAAGC--CAGTTGATCAGC-TCTGTTGAAA--AGCAGCTTCCGAAAG   1153
                      |||||||  .|.|||.||||| ||||    ||  ||.||||||||||.|
RBAM_010390__   1109 -AAAAAGCGAAACTTGTTCAGCTTCTG----AATGAGAAGCTTCCGAAGG   1153

BSNT_01730___   1154 TTGATGCGCCT----GATTTTGATGAAATTTTAAGTGGGCTTCCTTC---   1196
                     ..||    |||    |||||.||..|.||..|.||...||||||.||   
RBAM_010390__   1154 CCGA----CCTTCCGGATTTAGACAATATCGTCAGCCAGCTTCCGTCCGG   1199

BSNT_01730___   1197 ---AGCTGATCAGCTGCCTGACATCGCAACGATAAAAA----GCTCATTG   1239
                        ||.|..||||||.||.||.||..||...|||||||    |||||   
RBAM_010390__   1200 CGGAGATATTCAGCTTCCGGATATGTCAGTCATAAAAAGCGCGCTCA---   1246

BSNT_01730___   1240 GAAGATGTGAAAGCGCAGGTTGCCCAGGTGAAGGCATTGCCGGAAGCTAC   1289
                      |||||||.||||||.|||.||..|||.||||.|||.||||..|..|.||
RBAM_010390__   1247 -AAGATGTAAAAGCGAAGGCTGATCAGCTGAAAGCACTGCCTCAGTCCAC   1295

BSNT_01730___   1290 CTCTAAACTTTATAACGGCGCAAAAGCCACTCAAGACGCGATTGACAAAT   1339
                     .||.|||||.||||||||||||...||....||||||||||||.||.|..
RBAM_010390__   1296 ATCGAAACTGTATAACGGCGCAGCGGCGGTACAAGACGCGATTAACCAGC   1345

BSNT_01730___   1340 TAACTGCTGGATCTGAGAAATTATACAATGCGTCACAGCAG-------GT   1382
                     |.||.||.|||.||||.||||||||||  ||| .|..||||       .|
RBAM_010390__   1346 TGACAGCGGGAACTGATAAATTATACA--GCG-GAGCGCAGACCGTTTTT   1392

BSNT_01730___   1383 GACAGATGGCCAAACTAAACTGACAGCCGGCATCGGTGAATATAATAAGC   1432
                     ||.|    ||||||..||||||||||||||||||||.|||||.|| .|||
RBAM_010390__   1393 GAAA----GCCAAAACAAACTGACAGCCGGCATCGGCGAATACAA-CAGC   1437

BSNT_01730___   1433 -AGTTCGCAAAGGCAAAAGCGGGCTCAG-AGCAATTGGTGACAGGAAGCA   1480
                      ||||||.|.||...|||.|.||.|||| ||| .||.|||.||||.|||.
RBAM_010390__   1438 AAGTTCGGACAGCTCAAATCAGGATCAGAAGC-GTTAGTGTCAGGGAGCG   1486

BSNT_01730___   1481 GCCAAGTATCCGGCGGATTGTTTAAGCTGTTAGACGGGTCTAAAC-AGGT   1529
                     ||||||||||.|||||.||....||.|||.|.||||.| |.|||| |..|
RBAM_010390__   1487 GCCAAGTATCAGGCGGCTTAACGAAACTGCTGGACGCG-CAAAACAAAAT   1535

BSNT_01730___   1530 CCAAAGCGGATCAT-CAAAACTG-GCAGACGGATC-TGCATCACTTGATA   1576
                     |||...|||.||.| |||||.|| |||   ||.|| .||.||.||.|..|
RBAM_010390__   1536 CCATGACGGCTCGTCCAAAATTGAGCA---GGGTCAAGCGTCTCTCGGCA   1582

BSNT_01730___   1577 CAGGTTTAGGCAAGCTGTTGGACGGCACAGGAGAGCTGTCTAGTAAGCTG   1626
                     |.||||||.||||.||.||.||||||||.|||.|..||||.||..|||||
RBAM_010390__   1583 CCGGTTTAAGCAAACTTTTAGACGGCACCGGACAATTGTCCAGCCAGCTG   1632

BSNT_01730___   1627 AAGGATGCGGCTGACCAAACAGGAGATATCGATGCTGATGATCAAACATA   1676
                     ||.|||||||||||.|||||.||.||.||..|..|.|||||..||||.||
RBAM_010390__   1633 AAAGATGCGGCTGATCAAACCGGGGACATTAAGACAGATGACAAAACGTA   1682

BSNT_01730___   1677 TGGCATGTTTGCGGATCCGGTAAAAACCAAAGATGATGCCATTCATTCCG   1726
                     ..||||||||||.||||||||||||||..|.|||.|.||.||||||||||
RBAM_010390__   1683 CAGCATGTTTGCCGATCCGGTAAAAACGGACGATAACGCGATTCATTCCG   1732

BSNT_01730___   1727 TTCCTAACTACGGTACAGGGCTGACACCTTATATCCTGTCAATGGGCTTA   1776
                     |.||||||||||||||.||.|||||.||||||||.||.||.||||||||.
RBAM_010390__   1733 TGCCTAACTACGGTACTGGACTGACGCCTTATATTCTCTCTATGGGCTTG   1782

BSNT_01730___   1777 TATGTCGGCGGCATCATGCTGACGGTTGTCTTCCCGCTGAAGGAAGCGTC   1826
                     |||||||||||..|.|||||||||||.||.|||||.||||..|||||.||
RBAM_010390__   1783 TATGTCGGCGGATTGATGCTGACGGTCGTATTCCCTCTGAGTGAAGCTTC   1832

BSNT_01730___   1827 AGGACGTCCGAGAAATGGTTTTGAGTGGTTCTTCAGCAAATTCAATGTCA   1876
                     |||.|||||||||||.||||||||.||||||.||||||||||||.|||.|
RBAM_010390__   1833 AGGGCGTCCGAGAAACGGTTTTGAATGGTTCCTCAGCAAATTCAGTGTTA   1882

BSNT_01730___   1877 TGATGCTTGTAGGAATCATTCAATCATTGATTGTGGCGACGGTTCTTCTT   1926
                     |..|||||||.|||.|.||||||||..|.|||||.||.||||||||..|.
RBAM_010390__   1883 TTCTGCTTGTCGGACTGATTCAATCCGTTATTGTCGCCACGGTTCTGTTA   1932

BSNT_01730___   1927 CTGGGAATTGGTCTCGAGGTTGAGAGCACGTGGAGATTTTACGTGTTTAC   1976
                     ...|||||.||.||.||.||.||.||||||||||||||.||..|.|||||
RBAM_010390__   1933 AAAGGAATCGGGCTTGATGTGGAAAGCACGTGGAGATTCTATCTCTTTAC   1982

BSNT_01730___   1977 GATTATTACGAGTCTCGCTTTCCTGGCAATGATTCAATTTTTGGCCACGA   2026
                     |||.|||||.||..||||.||||||.|.|||||||||||.|||||.||.|
RBAM_010390__   1983 GATGATTACCAGCATCGCGTTCCTGTCCATGATTCAATTATTGGCGACAA   2032

BSNT_01730___   2027 CAATGGGCAACCCGGGACGATTTATCGCAGTCATTATTTTAGTGCTGCAG   2076
                     |.|||||.||.||||||||.||||||||.|||||.|||.|.|||||.|||
RBAM_010390__   2033 CGATGGGGAATCCGGGACGCTTTATCGCTGTCATCATTCTGGTGCTCCAG   2082

BSNT_01730___   2077 CTGGGAGCAAGCGGAGGAACCTTCCCGCTTGAATTGCTCCCGAATTTCTA   2126
                     ||.||.|||||||||||||||||||||||||||.|.||.|||...|||||
RBAM_010390__   2083 CTCGGGGCAAGCGGAGGAACCTTCCCGCTTGAACTCCTGCCGGGATTCTA   2132

BSNT_01730___   2127 TCAGGTCATCCATGGCGCATTGCCGATGACCTACAGCATTAACGGATTCA   2176
                     |||.||.||.||.||.|||.||||||||||.||||||||.|||||.|||.
RBAM_010390__   2133 TCAAGTGATTCACGGGGCACTGCCGATGACTTACAGCATCAACGGGTTCC   2182

BSNT_01730___   2177 GAGCGGTCATTTCAAACGGTGACTTTGGCTACATGTGGCAGATGGCCGGC   2226
                     |.||.|||||||||||.||.||||..||||||||||||||    ||.|||
RBAM_010390__   2183 GTGCCGTCATTTCAAATGGCGACTACGGCTACATGTGGCA----GCAGGC   2228

BSNT_01730___   2227 GTCTTAATC-----GGCATCGCCCTCGTCATGATTGCACTAAGCATTACT   2271
                     .|| .|.||     |||||||||.|.||||||||.||.||.|.|||....
RBAM_010390__   2229 ATC-CATTCTGTTGGGCATCGCCGTTGTCATGATCGCGCTGACCATCGTG   2277

BSNT_01730___   2272 TACTTTACAATGTTAAGCCGGAAGGAAGAAACATCAGAAG-------AAC   2314
                     ||.|||||..||..||||...||.|||.|.|.|.|.||||       |||
RBAM_010390__   2278 TATTTTACGGTGCAAAGCAAAAAAGAACACAAAACGGAAGAAGAAATAAC   2327

BSNT_01730___   2315 AGCGGGCTTCATAA   2328
                     ||       |||||
RBAM_010390__   2328 AG-------CATAA   2334


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