Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01730 and RBAM_010390
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_01730___yhgE.1.9828.seq
# -bsequence dna-align/RBAM_010390___yhgE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01730___yhgE-RBAM_010390___yhgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01730___yhgE-RBAM_010390___yhgE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01730___yhgE
# 2: RBAM_010390___yhgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2414
# Identity: 1757/2414 (72.8%)
# Similarity: 1757/2414 (72.8%)
# Gaps: 166/2414 ( 6.9%)
# Score: 6187.0
#
#
#=======================================
BSNT_01730___ 1 ATGAACACAATACGAAGTCAGTGGAAAGACATCGTAACAAGTAAAAAATT 50
.||||.||||||..|||.||||||||||||||.|||||.|..||.|||.|
RBAM_010390__ 1 TTGAATACAATAAAAAGCCAGTGGAAAGACATTGTAACGAACAAGAAACT 50
BSNT_01730___ 51 ATTGATTCCCATCATCGCCATTTTGTTTGTCCCGCTTATTTACAGCGGCG 100
.||.||.||||||||.|||||.||.||.||.|||||.||.||||||||.|
RBAM_010390__ 51 GTTAATCCCCATCATTGCCATATTATTCGTTCCGCTGATCTACAGCGGAG 100
BSNT_01730___ 101 TATTCTTAAAGGCTTATTGGGACCCGTACGGCACAGTTGACCAGCTGCCT 150
|.||.||.|||||.||.|||||||||||||||||.||.||.||||||||.
RBAM_010390__ 101 TGTTTTTGAAGGCGTACTGGGACCCGTACGGCACGGTGGATCAGCTGCCG 150
BSNT_01730___ 151 GTCGTTGTCGTCAACCAAGACAAGGGAGC-AACGTATGAAGGAGAAA-AA 198
||.||.||.||||||||.||.||.||.|| .|| ||.||||| |||| |.
RBAM_010390__ 151 GTTGTCGTTGTCAACCAGGATAAAGGGGCGGAC-TACGAAGG-GAAACAT 198
BSNT_01730___ 199 CTTCAAATCGGTGATGATCTGGTCAAAGAATTAAAGGATAATAACAACTT 248
|||||.||||||||.|||||.||.|||||.||||||.|.|||.|.||.||
RBAM_010390__ 199 CTTCAGATCGGTGACGATCTTGTGAAAGAGTTAAAGAAAAATGATAATTT 248
BSNT_01730___ 249 TGATTGGCATTTTTCCAATGATCTCGACCAATCGTTAAAGGACTTATTGA 298
|||||||||||||||.|..|||||.||.||||||||||||||||||||.|
RBAM_010390__ 249 TGATTGGCATTTTTCAAGCGATCTTGATCAATCGTTAAAGGACTTATTAA 298
BSNT_01730___ 299 ATCAAAAATATTATTTAGTTGTCGAGATTCCTGAGGATTTTTCTAAGAAT 348
||...||||||||||||.|.||||||||||||||.|||||||||||.||.
RBAM_010390__ 299 ATGCTAAATATTATTTATTGGTCGAGATTCCTGAAGATTTTTCTAATAAC 348
BSNT_01730___ 349 GCCAGCACCGTGTTGGACAAAAATCCAAAAAAATTGGATCTGAAATACCA 398
||||||||.||..||||.||||||||.||.||..|||||||||||||.||
RBAM_010390__ 349 GCCAGCACGGTAATGGATAAAAATCCGAAGAAGCTGGATCTGAAATATCA 398
BSNT_01730___ 399 TACAAATGCCGGTTCCAACTATGTAGGGGCAACGATCGGTGAAAAAGCGA 448
|||.||||||||.||.||||||||.||.||.||.|||||.|||||.||||
RBAM_010390__ 399 TACGAATGCCGGATCAAACTATGTCGGCGCGACAATCGGGGAAAAGGCGA 448
BSNT_01730___ 449 TTGATAAACTGAAAGCTTCTGTTTCTAAAGAAGTGACAGAGCAATATACG 498
|.||.|||||||||||.||.||.||.||||||||||||||||||||..|.
RBAM_010390__ 449 TCGACAAACTGAAAGCCTCCGTGTCGAAAGAAGTGACAGAGCAATACGCA 498
BSNT_01730___ 499 AAAGTTATTTTTGATAACTTTAAAGATATCGCAAAAGGTTTGAGCGACGC 548
|||||.|||||||||||||||||||||||.||.|||||..|..||.|.||
RBAM_010390__ 499 AAAGTCATTTTTGATAACTTTAAAGATATTGCCAAAGGGCTCGGCAAAGC 548
BSNT_01730___ 549 GAGCAGCGGCGCGAAAAAAATTGATGACGGCACAAAGGATGCGAAAAACG 598
.||||||||.||.||.|||||.||.||||||||.||..|.||||||.|||
RBAM_010390__ 549 CAGCAGCGGAGCCAAGAAAATAGACGACGGCACGAAAAACGCGAAAGACG 598
BSNT_01730___ 599 GAAGCGCACAGCTGAAAGAAAATCTGGCGAAGCTGAAGGAAAGCACCGCT 648
|.|||||..|||||||.||||||.|.||||||||.|..|||||||||||.
RBAM_010390__ 599 GCAGCGCCAAGCTGAAGGAAAATTTAGCGAAGCTTACTGAAAGCACCGCC 648
BSNT_01730___ 649 ACCATCAGTGACAAAACAGCGCAGCTTGCAGATGGAGCGGCTCAGGTGAC 698
||||||.|.||.||||||..||||||||||||.||.|||||..|.|||||
RBAM_010390__ 649 ACCATCGGCGATAAAACACAGCAGCTTGCAGACGGCGCGGCGAAAGTGAC 698
BSNT_01730___ 699 GAGCGGCATCCAATCACTTGATAGCTCGCTCGGTAAATTCCAGGACAGCA 748
.|||||.||.|||.|.|||||.|||||..|||..|||.|.||| |||
RBAM_010390__ 699 AAGCGGAATTCAAACGCTTGACAGCTCTATCGCAAAACTTCAG---AGC- 744
BSNT_01730___ 749 GCAA----CCAGATTTATGATAAATCTAGTCAGCTTGCAGCAGGATCAGG 794
|||| |.|.|||.|.||||||||..|.|||.||||..|||||..|||
RBAM_010390__ 745 GCAAGCGCCGAAATTCAAGATAAATCAGGACAGATTGCTTCAGGAGGAGG 794
BSNT_01730___ 795 -CAAGATAACGGGCAA----GCTGAATGAACTGAATGCCGGCCTT----- 834
|||| .|||.| |||||| ||| || |||||
RBAM_010390__ 795 CCAAG-----TGGCCAGCGGGCTGAA--AAC--AA-----GCCTTGACGC 830
BSNT_01730___ 835 -CAAAAGGTGCAGCAG----GGCTTGCCTAATCTGACAAACGGGCTGGAT 879
||||||..||..||| .|||| ||..||.|.||.|| |||||
RBAM_010390__ 831 ACAAAAGCAGCTCCAGCAAAAGCTT-CCGGATTTAACGAA-----TGGAT 874
BSNT_01730___ 880 CA-----GCTCAACAGTAAAGCGCAAGAAGGTTCTGAGAAAGCAGCAAAA 924
.| |.|.|||||.||.|||||.||||..|| ||| ||||
RBAM_010390__ 875 TAAGTGCGTTAAACAGCAAGGCGCAGGAAGTGTC-------GCA--AAAA 915
BSNT_01730___ 925 GCGGAAAAACTTATAAATGCGCTCGATTTAACGAAGCT-TGAAACAGCTG 973
||||....|.||..|.|||||.||.|||.|...||.|| |.|.||| .
RBAM_010390__ 916 GCGGCGGCATTTGAAGATGCGATCAATTCAGTCAACCTGTCAGACA---T 962
BSNT_01730___ 974 TGAATAAC------------CTCGAAAAGTCAGAAACAGCGA--TGAAGG 1009
|||| ||| ||||||.||.|.|||| || || ||.||.
RBAM_010390__ 963 TGAA-AACGCGGTTGGGCAGCTCGAACAGACTGAAA-AG-GATCTGCAGC 1009
BSNT_01730___ 1010 AATTTAAAAAACAGCTGTCTGACTTTG-AAAACAGCTTAAAAAACCGTGA 1058
|.|||||.||..||||.||||| |.|| ||||||||.|..|...|||.||
RBAM_010390__ 1010 AGTTTAAGAAGAAGCTTTCTGA-TCTGAAAAACAGCCTGGATGCCCGGGA 1058
BSNT_01730___ 1059 TCAGGCATTCAAAAATCTCATCAACTCGAGTGATTTCTTAACAGCAGAGC 1108
|.|.||..|||||||..|.||.||....||||||||||||||.|..||||
RBAM_010390__ 1059 TGATGCGGTCAAAAAGGTGATTAAGGACAGTGATTTCTTAACGGATGAGC 1108
BSNT_01730___ 1109 AAAAAAGC--CAGTTGATCAGC-TCTGTTGAAA--AGCAGCTTCCGAAAG 1153
||||||| .|.|||.||||| |||| || ||.||||||||||.|
RBAM_010390__ 1109 -AAAAAGCGAAACTTGTTCAGCTTCTG----AATGAGAAGCTTCCGAAGG 1153
BSNT_01730___ 1154 TTGATGCGCCT----GATTTTGATGAAATTTTAAGTGGGCTTCCTTC--- 1196
..|| ||| |||||.||..|.||..|.||...||||||.||
RBAM_010390__ 1154 CCGA----CCTTCCGGATTTAGACAATATCGTCAGCCAGCTTCCGTCCGG 1199
BSNT_01730___ 1197 ---AGCTGATCAGCTGCCTGACATCGCAACGATAAAAA----GCTCATTG 1239
||.|..||||||.||.||.||..||...||||||| |||||
RBAM_010390__ 1200 CGGAGATATTCAGCTTCCGGATATGTCAGTCATAAAAAGCGCGCTCA--- 1246
BSNT_01730___ 1240 GAAGATGTGAAAGCGCAGGTTGCCCAGGTGAAGGCATTGCCGGAAGCTAC 1289
|||||||.||||||.|||.||..|||.||||.|||.||||..|..|.||
RBAM_010390__ 1247 -AAGATGTAAAAGCGAAGGCTGATCAGCTGAAAGCACTGCCTCAGTCCAC 1295
BSNT_01730___ 1290 CTCTAAACTTTATAACGGCGCAAAAGCCACTCAAGACGCGATTGACAAAT 1339
.||.|||||.||||||||||||...||....||||||||||||.||.|..
RBAM_010390__ 1296 ATCGAAACTGTATAACGGCGCAGCGGCGGTACAAGACGCGATTAACCAGC 1345
BSNT_01730___ 1340 TAACTGCTGGATCTGAGAAATTATACAATGCGTCACAGCAG-------GT 1382
|.||.||.|||.||||.|||||||||| ||| .|..|||| .|
RBAM_010390__ 1346 TGACAGCGGGAACTGATAAATTATACA--GCG-GAGCGCAGACCGTTTTT 1392
BSNT_01730___ 1383 GACAGATGGCCAAACTAAACTGACAGCCGGCATCGGTGAATATAATAAGC 1432
||.| ||||||..||||||||||||||||||||.|||||.|| .|||
RBAM_010390__ 1393 GAAA----GCCAAAACAAACTGACAGCCGGCATCGGCGAATACAA-CAGC 1437
BSNT_01730___ 1433 -AGTTCGCAAAGGCAAAAGCGGGCTCAG-AGCAATTGGTGACAGGAAGCA 1480
||||||.|.||...|||.|.||.|||| ||| .||.|||.||||.|||.
RBAM_010390__ 1438 AAGTTCGGACAGCTCAAATCAGGATCAGAAGC-GTTAGTGTCAGGGAGCG 1486
BSNT_01730___ 1481 GCCAAGTATCCGGCGGATTGTTTAAGCTGTTAGACGGGTCTAAAC-AGGT 1529
||||||||||.|||||.||....||.|||.|.||||.| |.|||| |..|
RBAM_010390__ 1487 GCCAAGTATCAGGCGGCTTAACGAAACTGCTGGACGCG-CAAAACAAAAT 1535
BSNT_01730___ 1530 CCAAAGCGGATCAT-CAAAACTG-GCAGACGGATC-TGCATCACTTGATA 1576
|||...|||.||.| |||||.|| ||| ||.|| .||.||.||.|..|
RBAM_010390__ 1536 CCATGACGGCTCGTCCAAAATTGAGCA---GGGTCAAGCGTCTCTCGGCA 1582
BSNT_01730___ 1577 CAGGTTTAGGCAAGCTGTTGGACGGCACAGGAGAGCTGTCTAGTAAGCTG 1626
|.||||||.||||.||.||.||||||||.|||.|..||||.||..|||||
RBAM_010390__ 1583 CCGGTTTAAGCAAACTTTTAGACGGCACCGGACAATTGTCCAGCCAGCTG 1632
BSNT_01730___ 1627 AAGGATGCGGCTGACCAAACAGGAGATATCGATGCTGATGATCAAACATA 1676
||.|||||||||||.|||||.||.||.||..|..|.|||||..||||.||
RBAM_010390__ 1633 AAAGATGCGGCTGATCAAACCGGGGACATTAAGACAGATGACAAAACGTA 1682
BSNT_01730___ 1677 TGGCATGTTTGCGGATCCGGTAAAAACCAAAGATGATGCCATTCATTCCG 1726
..||||||||||.||||||||||||||..|.|||.|.||.||||||||||
RBAM_010390__ 1683 CAGCATGTTTGCCGATCCGGTAAAAACGGACGATAACGCGATTCATTCCG 1732
BSNT_01730___ 1727 TTCCTAACTACGGTACAGGGCTGACACCTTATATCCTGTCAATGGGCTTA 1776
|.||||||||||||||.||.|||||.||||||||.||.||.||||||||.
RBAM_010390__ 1733 TGCCTAACTACGGTACTGGACTGACGCCTTATATTCTCTCTATGGGCTTG 1782
BSNT_01730___ 1777 TATGTCGGCGGCATCATGCTGACGGTTGTCTTCCCGCTGAAGGAAGCGTC 1826
|||||||||||..|.|||||||||||.||.|||||.||||..|||||.||
RBAM_010390__ 1783 TATGTCGGCGGATTGATGCTGACGGTCGTATTCCCTCTGAGTGAAGCTTC 1832
BSNT_01730___ 1827 AGGACGTCCGAGAAATGGTTTTGAGTGGTTCTTCAGCAAATTCAATGTCA 1876
|||.|||||||||||.||||||||.||||||.||||||||||||.|||.|
RBAM_010390__ 1833 AGGGCGTCCGAGAAACGGTTTTGAATGGTTCCTCAGCAAATTCAGTGTTA 1882
BSNT_01730___ 1877 TGATGCTTGTAGGAATCATTCAATCATTGATTGTGGCGACGGTTCTTCTT 1926
|..|||||||.|||.|.||||||||..|.|||||.||.||||||||..|.
RBAM_010390__ 1883 TTCTGCTTGTCGGACTGATTCAATCCGTTATTGTCGCCACGGTTCTGTTA 1932
BSNT_01730___ 1927 CTGGGAATTGGTCTCGAGGTTGAGAGCACGTGGAGATTTTACGTGTTTAC 1976
...|||||.||.||.||.||.||.||||||||||||||.||..|.|||||
RBAM_010390__ 1933 AAAGGAATCGGGCTTGATGTGGAAAGCACGTGGAGATTCTATCTCTTTAC 1982
BSNT_01730___ 1977 GATTATTACGAGTCTCGCTTTCCTGGCAATGATTCAATTTTTGGCCACGA 2026
|||.|||||.||..||||.||||||.|.|||||||||||.|||||.||.|
RBAM_010390__ 1983 GATGATTACCAGCATCGCGTTCCTGTCCATGATTCAATTATTGGCGACAA 2032
BSNT_01730___ 2027 CAATGGGCAACCCGGGACGATTTATCGCAGTCATTATTTTAGTGCTGCAG 2076
|.|||||.||.||||||||.||||||||.|||||.|||.|.|||||.|||
RBAM_010390__ 2033 CGATGGGGAATCCGGGACGCTTTATCGCTGTCATCATTCTGGTGCTCCAG 2082
BSNT_01730___ 2077 CTGGGAGCAAGCGGAGGAACCTTCCCGCTTGAATTGCTCCCGAATTTCTA 2126
||.||.|||||||||||||||||||||||||||.|.||.|||...|||||
RBAM_010390__ 2083 CTCGGGGCAAGCGGAGGAACCTTCCCGCTTGAACTCCTGCCGGGATTCTA 2132
BSNT_01730___ 2127 TCAGGTCATCCATGGCGCATTGCCGATGACCTACAGCATTAACGGATTCA 2176
|||.||.||.||.||.|||.||||||||||.||||||||.|||||.|||.
RBAM_010390__ 2133 TCAAGTGATTCACGGGGCACTGCCGATGACTTACAGCATCAACGGGTTCC 2182
BSNT_01730___ 2177 GAGCGGTCATTTCAAACGGTGACTTTGGCTACATGTGGCAGATGGCCGGC 2226
|.||.|||||||||||.||.||||..|||||||||||||| ||.|||
RBAM_010390__ 2183 GTGCCGTCATTTCAAATGGCGACTACGGCTACATGTGGCA----GCAGGC 2228
BSNT_01730___ 2227 GTCTTAATC-----GGCATCGCCCTCGTCATGATTGCACTAAGCATTACT 2271
.|| .|.|| |||||||||.|.||||||||.||.||.|.|||....
RBAM_010390__ 2229 ATC-CATTCTGTTGGGCATCGCCGTTGTCATGATCGCGCTGACCATCGTG 2277
BSNT_01730___ 2272 TACTTTACAATGTTAAGCCGGAAGGAAGAAACATCAGAAG-------AAC 2314
||.|||||..||..||||...||.|||.|.|.|.|.|||| |||
RBAM_010390__ 2278 TATTTTACGGTGCAAAGCAAAAAAGAACACAAAACGGAAGAAGAAATAAC 2327
BSNT_01730___ 2315 AGCGGGCTTCATAA 2328
|| |||||
RBAM_010390__ 2328 AG-------CATAA 2334
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