Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01729 and RBAM_010380

See Amino acid alignment / Visit BSNT_01729 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_01729___yhgD.1.9828.seq
#    -bsequence dna-align/RBAM_010380___yhgD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01729___yhgD-RBAM_010380___yhgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01729___yhgD-RBAM_010380___yhgD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01729___yhgD
# 2: RBAM_010380___yhgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 589
# Identity:     457/589 (77.6%)
# Similarity:   457/589 (77.6%)
# Gaps:          29/589 ( 4.9%)
# Score: 1801.5
# 
#
#=======================================

BSNT_01729___      1 ATGTCAATAGATCGAAAAAAGCTCATTTTGGAGGCGGCTACAAAGTCTTT     50
                     |||||..|.|||||.||||||||||||.||||.|||||.||.||||||||
RBAM_010380__      1 ATGTCCGTCGATCGGAAAAAGCTCATTCTGGAAGCGGCAACGAAGTCTTT     50

BSNT_01729___     51 CACGCAGTTCGGGTATAAAGCGACGACAATGGATCTTGTCGCAAAACTTG    100
                     .||.||.|||||.||.|||||.||||||||||||||.||.|||||.||||
RBAM_010380__     51 TACACAATTCGGCTACAAAGCAACGACAATGGATCTGGTGGCAAAGCTTG    100

BSNT_01729___    101 CGAACGTGGGGAAGGGAACCATTTATACTTTTTTCAAAAACAAAGAAGAG    150
                     |.||.|||||||||||||||||.||.||.||||||||||||||||||||.
RBAM_010380__    101 CAAATGTGGGGAAGGGAACCATCTACACGTTTTTCAAAAACAAAGAAGAA    150

BSNT_01729___    151 CTGTTTGACGAGATTTTCACTACTTTATTAAAGGAAATGAAGCAAAAAGC    200
                     ||||||||.||.||||||||.|||.|.||||..|||||||||.||.|.||
RBAM_010380__    151 CTGTTTGATGATATTTTCACCACTATTTTAAGAGAAATGAAGGAACACGC    200

BSNT_01729___    201 GGATGAAGCGATGGAGCCGAACCTTCCGTTCCATGAAAATGTGCACAGAG    250
                     .||.|||||||||.|.|||.|.|||.|.||.||.||||||||.|||.|.|
RBAM_010380__    201 AGACGAAGCGATGAAACCGGAGCTTTCATTTCACGAAAATGTCCACCGGG    250

BSNT_01729___    251 CGCTGTTTGCCATTCTGGAGTTCAGGAAAACACATCAGCTGACGATTAAA    300
                     ||||..|.||.|||.||||.|||||.||||||||.||||||||.||||||
RBAM_010380__    251 CGCTTGTCGCGATTTTGGAATTCAGAAAAACACACCAGCTGACTATTAAA    300

BSNT_01729___    301 ATTTTCCAAGAGAATGCCGAGATTGGTACAATGGCAGTTCAGGAAGTGAT    350
                     |||||.||.|||||.|||||||||||||||||.||.||||||||.||.||
RBAM_010380__    301 ATTTTTCAGGAGAACGCCGAGATTGGTACAATAGCCGTTCAGGATGTCAT    350

BSNT_01729___    351 CCAGAAAATGGAGCGAGCCATACTGTCTTATATCAAAAGTAAG-------    393
                     ...||||||||||||.|||||.|||||.||.||.|||...|||       
RBAM_010380__    351 TGCGAAAATGGAGCGGGCCATTCTGTCATACATTAAAGAAAAGATAGAAA    400

BSNT_01729___    394 -----ATTGAAGACGGGATCAAAAGCGGCGCAATCAAGCCGTGCGACCCT    438
                          ||||||.||||      ||||      ||.||.|||||.||.||.
RBAM_010380__    401 CAGCCATTGAAAACGG------AAGC------ATTAAACCGTGTGATCCG    438

BSNT_01729___    439 GAACTGACAGCCTTTGTGATGCTGAAGCTTTATATCGCGCTCATTTTTGA    488
                     ||||||||.||.|||||||||||.|||||.||.||||||||.||.|||||
RBAM_010380__    439 GAACTGACCGCTTTTGTGATGCTCAAGCTCTACATCGCGCTGATATTTGA    488

BSNT_01729___    489 CTGGGAAAAACAACACCCCCCGCTTGATAAAGAGACAATTGCGGGACTGC    538
                     ||||||||||.|.||.||.||.|||||.||||||||.||.||.|.|.|||
RBAM_010380__    489 CTGGGAAAAAAACCATCCGCCTCTTGAAAAAGAGACGATCGCCGAATTGC    538

BSNT_01729___    539 TTGAATTGTATGTT-GTCAAAGGATTGTCAGCGAACTAG    576
                     |.|||.|||||||| ||| |||||||   |.|.||.||.
RBAM_010380__    539 TGGAAATGTATGTTGGTC-AAGGATT---ATCTAAATAA    573


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.